Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0611900-02
CDS Infomation	cds chromosome:IRGSP-1.0:1:24242458:24245152:-1 gene:Os01g0611900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0611900-01);Pentatricopeptide repeat domain containing protein. (Os01t0611900-02)
Sequence	ATGCGCCAGCCACAGCTCCGCGCCGCCACCTCGCGCCCGCTCTCATGGCGCTCCAACTGC ACGGCTGCTGCGGCGTCCGCCTCCCAGCCGAGCGAGCCGCTCTCCGCCCACTTCACCAAC GGCCGGCCCCTCTCGCGCGCCCCGGCCGTGGTGAGGGACCTCTCCTCGGTGCTCCGCGCG ATCCTCGCCGCCTCCCCGTCCTCCCACAGCCGCGCGTACCCGCTCCTCAAGTCCGCCGCC TTCGACGCCCGCCTCGCGCCGGACGCGCTCGTCGACGCCGTCCTCTCCGCCGTGGGCGGC CCGGGGTCACGGCAGGCCACCGCGCTCCTCAGCCGCCTCCTCGCCTCCCTGTGCCGCGCC GGCCGCGCTGGCGCGGCCGCCGCCGCCTACGCCAGCATGGAGGCGCGCGGGGTCACCCCG GACGCCAAGTCCCGCACCGACCTCCTCGCCGTCACGGCGCGGAGCGCGTCGGCCGCGGAC GCCCTCGCGCTGCTCGCCGAGATGCGGGGGAAGGGGCGCCCCTTGGACGCGTGGATGTTC GACGTGGTGATGCGCGCTTGCTTCAAGGAAGGGATGTACGACGACGCGGTCAGGCTGTTC GACGAAATGCCTGCCTCTGAGATCGAGCCCGACCAGCGCGTGTGCTCTGTCGCTATCGCG TCCCTATGCAAGCTGCGTGACGCCAACCGTGCTCTGCTGGTGCTGAGGAAGATGCAGGAT GCGGGGTTCGTGCCGTGGGACTTCACGTTCAACTCCGTGGTGGATGTGCTCGTGAAGGGA GGGAGGATGGAGGAGGCGCTGCACATAAAGGATGAGTTGCTTGCTACGGGGAAGAAAATG AGTGTGGTTCTCGCAACAACGTTGATGCACGGCTATTGCTTGCAACGGGAGGTTAGGAAA GCGCTGGATATATTCGAGGAGACACTAAGGGACGGTCTGGTACCAACCGATGTAACATAT ACGGTGCTGATCAGAGGTTGTACTGAAGAGGGGATGCCAGAGAAGGCCTATGAGCTGTGC CGCCAGATGAGAGATCATGGATTGTTGCCGAGCACAAATGAGTTCAATATGGTTATCAAG GGCCTTTTGAATGATAAATTGTGGAAGGATGCTGTAAGCTTGTTCAAGGAGATGGCTGAT TCTGGGATACCAGATGCCTTCACATACAATATACTAATTCACTGGCTCTGTCAGCGTCGC AAAATTCGCGAAGCGCTTAACTTGTGGGAAAAGATGAATGAAACAGGAGTGAAACCATAT ATCGTGACATACCACAGCTTGTTGTTGTGTTATTGTGTGAATGGGTGCATGGATGAAGCA GTCAAGCTGTACACTGAGATGCCTGGAAAAGGGTTCACACCTAATGTTGTCACTTACACA ACGCTGATGAAAGGGCACATAAATAAGGCTGCTTTTGACAAGGCTTATGCCCTCCTTGCT GAAATGAAACAGAATGGAGTCTCTTGCAATGATTATACATACAACACTCTCATAAATGGC CTTTGTGTGGTTGGCCGAGTTTGTGAAGTTGGTGAAATGCTGAAGAGATTTGAAACTGAA GGTTTTGTTCCAACTGCAATGACATACAATAGTATCATCAATGGATTTATAAAAGCTGGC ATGATGGGCTCAGCATTTGCTGTGTATCAGCAGATGTGTGCAAAAGGCATACCTCCCAAC ATAGTAACATATACCAGTTTCATTGATGGATACTGTAAGACTAGTTGCTGTGACCTGGCA CTGAAGATGCTAAATGATGTCAGGTGCAAAGGCCTTCGACCTGATATCGCTGCATATAAT TCCTTAATATTTGGGTTTTGCCAAGAGGGGAATATGTCTCATGCACTGCAAGTTCTTGTC CTTATGCTGAAAGATGGTCTTTTACCAAATATTTCAGTCTACAACAGTTTCATTACAGGG TACAAGAATTTGAAAATGATGGAAGAAGCTTTGAGATTGTACGAGAAAATGATTAAAGAA GGAATTGATCTTGATACAGCAACCTACACTACCTTAATTGATGGGTTCTCAAAAGATGGC AATGTAACCTTTGCATTGAAACTATACTCAGAGATGGTGGCTAAGGGTAATATTCCTGAT CATATTACTTTCACAGCATTAACACATGGTCTTTGCCGCAACGGAGATATCGATGATGCT AGAAAATTATTGGATGAAATGAATAGGTTAGATATACGCCCTAATGTTTTGATGTACAAC ATGTTGATAAACGGATACCTCCGTAATGGAAAGCTGCAAGAAGCGTTCCGGTTGCATGAT GAAATGCTTGAAAGGAAAATTATGCCAGATGATACAACATATGACATACTAGTTGGCATG AAATCTTTGGGAAGTGACAGTCCCATTGACGCGGAGAATCCTAATTTAAGTTCCACAGGA TAA

Peptide Sequence

PEP ID	Os01t0611900-02
PEP Infomation	pep chromosome:IRGSP-1.0:1:24242458:24245152:-1 gene:Os01g0611900 transcript:Os01t0611900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0611900-01);Pentatricopeptide repeat domain containing protein. (Os01t0611900-02)
Sequence	MRQPQLRAATSRPLSWRSNCTAAAASASQPSEPLSAHFTNGRPLSRAPAVVRDLSSVLRA ILAASPSSHSRAYPLLKSAAFDARLAPDALVDAVLSAVGGPGSRQATALLSRLLASLCRA GRAGAAAAAYASMEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGRPLDAWMF DVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQD AGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRK ALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIK GLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPY IVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLA EMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAG MMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYN SLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKE GIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDA RKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILVGM KSLGSDSPIDAENPNLSSTG

Transcript Sequence

Transcript ID	Os01t0611900-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:24242458:24245152:-1 gene:Os01g0611900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0611900-01);Pentatricopeptide repeat domain containing protein. (Os01t0611900-02)
Sequence	ACACGACACTGTCGACACACCATGCGCCAGCCACAGCTCCGCGCCGCCACCTCGCGCCCG CTCTCATGGCGCTCCAACTGCACGGCTGCTGCGGCGTCCGCCTCCCAGCCGAGCGAGCCG CTCTCCGCCCACTTCACCAACGGCCGGCCCCTCTCGCGCGCCCCGGCCGTGGTGAGGGAC CTCTCCTCGGTGCTCCGCGCGATCCTCGCCGCCTCCCCGTCCTCCCACAGCCGCGCGTAC CCGCTCCTCAAGTCCGCCGCCTTCGACGCCCGCCTCGCGCCGGACGCGCTCGTCGACGCC GTCCTCTCCGCCGTGGGCGGCCCGGGGTCACGGCAGGCCACCGCGCTCCTCAGCCGCCTC CTCGCCTCCCTGTGCCGCGCCGGCCGCGCTGGCGCGGCCGCCGCCGCCTACGCCAGCATG GAGGCGCGCGGGGTCACCCCGGACGCCAAGTCCCGCACCGACCTCCTCGCCGTCACGGCG CGGAGCGCGTCGGCCGCGGACGCCCTCGCGCTGCTCGCCGAGATGCGGGGGAAGGGGCGC CCCTTGGACGCGTGGATGTTCGACGTGGTGATGCGCGCTTGCTTCAAGGAAGGGATGTAC GACGACGCGGTCAGGCTGTTCGACGAAATGCCTGCCTCTGAGATCGAGCCCGACCAGCGC GTGTGCTCTGTCGCTATCGCGTCCCTATGCAAGCTGCGTGACGCCAACCGTGCTCTGCTG GTGCTGAGGAAGATGCAGGATGCGGGGTTCGTGCCGTGGGACTTCACGTTCAACTCCGTG GTGGATGTGCTCGTGAAGGGAGGGAGGATGGAGGAGGCGCTGCACATAAAGGATGAGTTG CTTGCTACGGGGAAGAAAATGAGTGTGGTTCTCGCAACAACGTTGATGCACGGCTATTGC TTGCAACGGGAGGTTAGGAAAGCGCTGGATATATTCGAGGAGACACTAAGGGACGGTCTG GTACCAACCGATGTAACATATACGGTGCTGATCAGAGGTTGTACTGAAGAGGGGATGCCA GAGAAGGCCTATGAGCTGTGCCGCCAGATGAGAGATCATGGATTGTTGCCGAGCACAAAT GAGTTCAATATGGTTATCAAGGGCCTTTTGAATGATAAATTGTGGAAGGATGCTGTAAGC TTGTTCAAGGAGATGGCTGATTCTGGGATACCAGATGCCTTCACATACAATATACTAATT CACTGGCTCTGTCAGCGTCGCAAAATTCGCGAAGCGCTTAACTTGTGGGAAAAGATGAAT GAAACAGGAGTGAAACCATATATCGTGACATACCACAGCTTGTTGTTGTGTTATTGTGTG AATGGGTGCATGGATGAAGCAGTCAAGCTGTACACTGAGATGCCTGGAAAAGGGTTCACA CCTAATGTTGTCACTTACACAACGCTGATGAAAGGGCACATAAATAAGGCTGCTTTTGAC AAGGCTTATGCCCTCCTTGCTGAAATGAAACAGAATGGAGTCTCTTGCAATGATTATACA TACAACACTCTCATAAATGGCCTTTGTGTGGTTGGCCGAGTTTGTGAAGTTGGTGAAATG CTGAAGAGATTTGAAACTGAAGGTTTTGTTCCAACTGCAATGACATACAATAGTATCATC AATGGATTTATAAAAGCTGGCATGATGGGCTCAGCATTTGCTGTGTATCAGCAGATGTGT GCAAAAGGCATACCTCCCAACATAGTAACATATACCAGTTTCATTGATGGATACTGTAAG ACTAGTTGCTGTGACCTGGCACTGAAGATGCTAAATGATGTCAGGTGCAAAGGCCTTCGA CCTGATATCGCTGCATATAATTCCTTAATATTTGGGTTTTGCCAAGAGGGGAATATGTCT CATGCACTGCAAGTTCTTGTCCTTATGCTGAAAGATGGTCTTTTACCAAATATTTCAGTC TACAACAGTTTCATTACAGGGTACAAGAATTTGAAAATGATGGAAGAAGCTTTGAGATTG TACGAGAAAATGATTAAAGAAGGAATTGATCTTGATACAGCAACCTACACTACCTTAATT GATGGGTTCTCAAAAGATGGCAATGTAACCTTTGCATTGAAACTATACTCAGAGATGGTG GCTAAGGGTAATATTCCTGATCATATTACTTTCACAGCATTAACACATGGTCTTTGCCGC AACGGAGATATCGATGATGCTAGAAAATTATTGGATGAAATGAATAGGTTAGATATACGC CCTAATGTTTTGATGTACAACATGTTGATAAACGGATACCTCCGTAATGGAAAGCTGCAA GAAGCGTTCCGGTTGCATGATGAAATGCTTGAAAGGAAAATTATGCCAGATGATACAACA TATGACATACTAGTTGGCATGAAATCTTTGGGAAGTGACAGTCCCATTGACGCGGAGAAT CCTAATTTAAGTTCCACAGGATAAGGATCAAGAGCTGGCTTGAGAAGATTAAACTTTCCA TTGTATGGCCAGTGTCAGATTATGAGTTTTGCTATATATAAAGTGAAATCTTAGCTATGG CAAATAGAAGCAAAGGTAAGCATTGAGATTCAGTTACTAACAAGAATTCACCTTTTATTA TTATGTAATCTCTATTTTACCATTGGCACTTTGTGATTACTTCTGTACTATACATTAATT TGTGTCCAATCAATGTACATGATTTTCCCTTTTTGGTATTATTGTTGAACTTCGC