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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0610500-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:24151040:24153571:-1 gene:Os01g0610500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Yip1 domain containing protein. (Os01t0610500-01);Similar to Yip1 domain family member 1. (Os01t0610500-02)
Sequence

GGCGGCGGCGCTGGGTCGGACGACGCCGGGCAGGGCGGGTGGTTCCGGATGTTCTCCGTC
GCGGCGTACAAGCCCTACTTCGACGTGGACACCTCCGACGTGGTGGAGAGGATCTGGGAG
TCCGTCTTCCCCTTCCGCGGCACCTTCACCGAGAAGACCTCCGAGAACCCCGACCTATAT
GGGCCATTCTGGACATGCACCACCCTGATTTTCGTTGCTGCATCCATTGCCACATTTGTC
ACCTACCTATCCCACAAATGGCATAAGAAGGAGTGGAACTATGATATTAACCTGGTTACA
TGGTCTGCTGGCTTATTCTATGGCTACGTGACATTTGTTCCCCTTGGTCTATATGTCATC
CTTAAGTACTTCTCAGCACCTGCTGGACTAGTGCAACTATGGTGCCTCTATGGATACTCT
TTATTCATCTTCATTCCAGCATCGCTCCTGTCTATTGTGCCAATAGAAATATTCAGGTGG
GTGATTGCTGGTGTCGCGGGGTTTATGTCTGCTACCTTCGTTGCTATGAATCTGCGCGCT
CACATTGTAAATTCTGGAGAGCGATGGTTCTTGATCGTTGCAGGGATATTCTTGTTGCAG
TTGGGATTGGCTGTTTTGCTGAAACTCTATTTCTTCACGATAACTGTATAG

Peptide Sequence

PEP ID

Os01t0610500-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:24151040:24153571:-1 gene:Os01g0610500 transcript:Os01t0610500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Yip1 domain containing protein. (Os01t0610500-01);Similar to Yip1 domain family member 1. (Os01t0610500-02)
Sequence

GGGAGSDDAGQGGWFRMFSVAAYKPYFDVDTSDVVERIWESVFPFRGTFTEKTSENPDLY
GPFWTCTTLIFVAASIATFVTYLSHKWHKKEWNYDINLVTWSAGLFYGYVTFVPLGLYVI
LKYFSAPAGLVQLWCLYGYSLFIFIPASLLSIVPIEIFRWVIAGVAGFMSATFVAMNLRA
HIVNSGERWFLIVAGIFLLQLGLAVLLKLYFFTITV

Transcript Sequence

Transcript ID

Os01t0610500-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:24151040:24153571:-1 gene:Os01g0610500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Yip1 domain containing protein. (Os01t0610500-01);Similar to Yip1 domain family member 1. (Os01t0610500-02)
Sequence

CGGCGGCGGCGCTGGGTCGGACGACGCCGGGCAGGGCGGGTGGTTCCGGATGTTCTCCGT
CGCGGCGTACAAGCCCTACTTCGACGTGGACACCTCCGACGTGGTGGAGAGGATCTGGGA
GTCCGTCTTCCCCTTCCGCGGCACCTTCACCGAGAAGACCTCCGAGAACCCCGACCTATA
TGGGCCATTCTGGACATGCACCACCCTGATTTTCGTTGCTGCATCCATTGCCACATTTGT
CACCTACCTATCCCACAAATGGCATAAGAAGGAGTGGAACTATGATATTAACCTGGTTAC
ATGGTCTGCTGGCTTATTCTATGGCTACGTGACATTTGTTCCCCTTGGTCTATATGTCAT
CCTTAAGTACTTCTCAGCACCTGCTGGACTAGTGCAACTATGGTGCCTCTATGGATACTC
TTTATTCATCTTCATTCCAGCATCGCTCCTGTCTATTGTGCCAATAGAAATATTCAGGTG
GGTGATTGCTGGTGTCGCGGGGTTTATGTCTGCTACCTTCGTTGCTATGAATCTGCGCGC
TCACATTGTAAATTCTGGAGAGCGATGGTTCTTGATCGTTGCAGGGATATTCTTGTTGCA
GTTGGGATTGGCTGTTTTGCTGAAACTCTATTTCTTCACGATAACTGTATAGGGAACTGC
CATACTTGCTTGTATTAGTCAGGATTGGATACACGGTTTTTCAGGCCGAATTACTCCCGG
ATTCGTTGATGTAATTTTCCAAGTATACATCCATCTTACATGTGACATTGTGACAAGGAA
AGGCCGCTTCGTTAGCGTACGAGACGTATTACAATGGCAAGACTTGTCCATGGATTATTA
CGAGATTAAGGCTTAAAGAATCCCCTTTTGTAGTCCATTTTGTGTTCCATACTTGAGATT
AATAATTAATTAC