Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0607200-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:23923718:23933449:1 gene:Os01g0607200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:bi-directional amino acid transporter 1 description:Amino acid permease subfamily protein. (Os01t0607200-01);Similar to amino acid permease family protein. (Os01t0607200-02)
Sequence

ATGGCGGAGGAAGGGCAGCGCGGCGGCTACAGCCGGCTCGCCGGCGATGAGGAGGTGGCT
ACGGCGAGCGGCGGCGGCGGCGGCGACTACGACGAGCGGAAGCTGAGGCTGCTCGGCTAC
GAGCCGCAGCTCAAGCGCAACCTCTCGCTGCTGTCCAACTTCGCGGTGTCGTTCTCGATC
GTGTCGGTGCTGACGGGGATCACGACGCTGTTCGGGACGGGGCTGCAGTTCGGCGGGCCG
GCGACGATGGTGTACGGCTGGCCCATCGCCGGCGCCATGACGCTCGTCGTCGGCCTCGCC
ATGGCCGAGATCTGCTCCGCCTACCCGACCTCCGGTGGCCTCTACTTCTGGAGCGCGAGG
CTCTGCAGCCACCGCCGCTGGGGCCCCTTCGCTTCATGGCTCACCGGCTGGTTTAACATT
GTCGGACAGTGGGCGGTGACGACCAGCGTGGACTTCTCACTGGCCCAGCTGATTCAGGTG
ATCATCCTGCTCAGCACTGGGGGCAACAACGGAGGAGGGTACATGGCGTCCAAGTACGTC
GTGATCGCCTTCCACGCCGCCATCCTGCTGAGCCACGCCGCCATCAACAGCCTCCCCATC
ACCTGGCTTTCCTTCTTTGGGCAGTTCGCGGCTGCCTGGAACATGCTAGGTGTCTTTGTC
CTCATGATTGCTGTGCCGACGGTTGCTACCGAGAGGGCCAGTGCCAAGTTTGTGTTCACC
CATTTCAACACTGAAAACAACGCTGGGATTCACAGTAACTTTTACATCTTCGTGCTGGGG
CTCCTGATGAGCCAGTACACGCTGACAGGATATGACGCGTCTGCGCATATGACCGAGGAG
ACGAAGAATGCTGACAGGAATGGCCCGATCGGCATCATCAGCGCGATTGGGATATCGATA
ATAGTAGGATGGGGATACATTCTTGGCATCACCTTTGCAGTGAAGGACATACCTTACCTG
CTGAACCCCGAGAACGATGCTGGAGGGTATGCCATTGCTGAGGTGTTCTACCTCGCCTTC
AAGAGCCGGTACGGGAGCGGCATCGGCGGGATCATCTGCCTAGGGATCGTCGCCGTCGCG
ATATACTTCTGTGGCATGAGCTCGGTAACAAGCAACTCAAGGATGGCGTACGCGTTCTCG
AGAGACGGCGCGATGCCATTGTCGTCCGTCTGGCACAAGGTCAACAAGCACGAGGTGCCG
ATCAACGCCGTCTGGCTCTCGGCCCTCATCTCCCTCTGCATGGCATTGCCGTCGCTGGGG
AGCTTGGTGGCGTTCCAGGCGATGGTGTCGATCGCGACGATCGGGCTGTACGTGGCGTAC
GCGCTGCCGATCCTGTTCAGGGTGACGCTGGCGCGGAAGCACTTCGTGCCGGGGCCCTTC
AACCTGGGGCGGTGCGGCGTCGCCGTCGGCTGGGCGGCGGTGCTGTGGGTGGCCACCATC
ACCGTGCTCTTCTCGCTGCCGGTGTCGTACCCGGTCACCAAGGACACCCTCAACTACACC
CCCGTCGCCGTCGGCGGCCTCTTCCTCCTCGTCCTCTCCTCCTGGCTCCTCAGCGCCAGG
CACTGGTTCAAAGGCCCCATCACCAACCTCGATGGCTAG

Peptide Sequence

PEP ID

Os01t0607200-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:23923718:23933449:1 gene:Os01g0607200 transcript:Os01t0607200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:bi-directional amino acid transporter 1 description:Amino acid permease subfamily protein. (Os01t0607200-01);Similar to amino acid permease family protein. (Os01t0607200-02)
Sequence

MAEEGQRGGYSRLAGDEEVATASGGGGGDYDERKLRLLGYEPQLKRNLSLLSNFAVSFSI
VSVLTGITTLFGTGLQFGGPATMVYGWPIAGAMTLVVGLAMAEICSAYPTSGGLYFWSAR
LCSHRRWGPFASWLTGWFNIVGQWAVTTSVDFSLAQLIQVIILLSTGGNNGGGYMASKYV
VIAFHAAILLSHAAINSLPITWLSFFGQFAAAWNMLGVFVLMIAVPTVATERASAKFVFT
HFNTENNAGIHSNFYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPIGIISAIGISI
IVGWGYILGITFAVKDIPYLLNPENDAGGYAIAEVFYLAFKSRYGSGIGGIICLGIVAVA
IYFCGMSSVTSNSRMAYAFSRDGAMPLSSVWHKVNKHEVPINAVWLSALISLCMALPSLG
SLVAFQAMVSIATIGLYVAYALPILFRVTLARKHFVPGPFNLGRCGVAVGWAAVLWVATI
TVLFSLPVSYPVTKDTLNYTPVAVGGLFLLVLSSWLLSARHWFKGPITNLDG

Transcript Sequence

Transcript ID

Os01t0607200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:23923718:23933449:1 gene:Os01g0607200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:bi-directional amino acid transporter 1 description:Amino acid permease subfamily protein. (Os01t0607200-01);Similar to amino acid permease family protein. (Os01t0607200-02)
Sequence

GTCGGAGTCGAAATCCCCCCCCAAATAGTTGGTGGTAGCGATCAGTAGGCAGGAGAGGAT
TAGGAGGGATCGGAGACCGACATGGCGGAGGAAGGGCAGCGCGGCGGCTACAGCCGGCTC
GCCGGCGATGAGGAGGTGGCTACGGCGAGCGGCGGCGGCGGCGGCGACTACGACGAGCGG
AAGCTGAGGCTGCTCGGCTACGAGCCGCAGCTCAAGCGCAACCTCTCGCTGCTGTCCAAC
TTCGCGGTGTCGTTCTCGATCGTGTCGGTGCTGACGGGGATCACGACGCTGTTCGGGACG
GGGCTGCAGTTCGGCGGGCCGGCGACGATGGTGTACGGCTGGCCCATCGCCGGCGCCATG
ACGCTCGTCGTCGGCCTCGCCATGGCCGAGATCTGCTCCGCCTACCCGACCTCCGGTGGC
CTCTACTTCTGGAGCGCGAGGCTCTGCAGCCACCGCCGCTGGGGCCCCTTCGCTTCATGG
CTCACCGGCTGGTTTAACATTGTCGGACAGTGGGCGGTGACGACCAGCGTGGACTTCTCA
CTGGCCCAGCTGATTCAGGTGATCATCCTGCTCAGCACTGGGGGCAACAACGGAGGAGGG
TACATGGCGTCCAAGTACGTCGTGATCGCCTTCCACGCCGCCATCCTGCTGAGCCACGCC
GCCATCAACAGCCTCCCCATCACCTGGCTTTCCTTCTTTGGGCAGTTCGCGGCTGCCTGG
AACATGCTAGGTGTCTTTGTCCTCATGATTGCTGTGCCGACGGTTGCTACCGAGAGGGCC
AGTGCCAAGTTTGTGTTCACCCATTTCAACACTGAAAACAACGCTGGGATTCACAGTAAC
TTTTACATCTTCGTGCTGGGGCTCCTGATGAGCCAGTACACGCTGACAGGATATGACGCG
TCTGCGCATATGACCGAGGAGACGAAGAATGCTGACAGGAATGGCCCGATCGGCATCATC
AGCGCGATTGGGATATCGATAATAGTAGGATGGGGATACATTCTTGGCATCACCTTTGCA
GTGAAGGACATACCTTACCTGCTGAACCCCGAGAACGATGCTGGAGGGTATGCCATTGCT
GAGGTGTTCTACCTCGCCTTCAAGAGCCGGTACGGGAGCGGCATCGGCGGGATCATCTGC
CTAGGGATCGTCGCCGTCGCGATATACTTCTGTGGCATGAGCTCGGTAACAAGCAACTCA
AGGATGGCGTACGCGTTCTCGAGAGACGGCGCGATGCCATTGTCGTCCGTCTGGCACAAG
GTCAACAAGCACGAGGTGCCGATCAACGCCGTCTGGCTCTCGGCCCTCATCTCCCTCTGC
ATGGCATTGCCGTCGCTGGGGAGCTTGGTGGCGTTCCAGGCGATGGTGTCGATCGCGACG
ATCGGGCTGTACGTGGCGTACGCGCTGCCGATCCTGTTCAGGGTGACGCTGGCGCGGAAG
CACTTCGTGCCGGGGCCCTTCAACCTGGGGCGGTGCGGCGTCGCCGTCGGCTGGGCGGCG
GTGCTGTGGGTGGCCACCATCACCGTGCTCTTCTCGCTGCCGGTGTCGTACCCGGTCACC
AAGGACACCCTCAACTACACCCCCGTCGCCGTCGGCGGCCTCTTCCTCCTCGTCCTCTCC
TCCTGGCTCCTCAGCGCCAGGCACTGGTTCAAAGGCCCCATCACCAACCTCGATGGCTAG
CTAAGCCAAGATTGAGGTTTTGGTTTTGGTTTTCGCCGGTGGATATGGAAATGCAGTGGG
AGATGGAAGAATCGTCGTCGATGATCGGAGGCGTTTCAGGTGGGAGGAGAAGTATAACTG
AAGAACAGGTAAGAAGATGATCTGGAAGGGAAACGGGAGCATATCATGTCATGGTGGTGG
TGTTGTGATTAGTTGTTGATTTGTTCAGCGAAATTATATTACGTGGAAGGGGATTATACA
TTTTATACACTGGTTGTAGATTGACAATATGTACTAAGAAATTGACGATTCAATTGAAGG
CTAAAAGCAGCTGAAACAGTTGTGG