Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0605650-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:23856793:23861718:1 gene:Os01g0605650 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C3HC-like domain containing protein. (Os01t0605650-01)
Sequence	AAGCAGCGGCGGCCTCTCCTCTCCAGCCCCGACGACGCATCGCCGCTCGCCGCCGATCCA CTCGTCTCGCGCCACCCCACGATGGCCACCGGCGGCGGCGGCGGCGGGGACATCGGCGCC GACTCGGAGCGGCGCCTCAAGAAGGCCATGGACAAGCTCTACCACTTCCCCAAGCCCAAG GCTGGCACGGGGCCCGGCTCCTCCAAGCCCTCTTCCGCATCCACCTCCTCCGCTCTCAGC ATCGGGAGGGCGGGGAAGGCGGCTGGCGCAGGGGGGAGGAGGTTCGGGATGGTGCGGGGC TCGCGGCTCCCGTCGCAGCTCGCGGCCATGTCGGCGATCTCGCCGCCGCCGCCGTGCCGC CCGTGGGACCGCGCCGACCTCATGCGGCGGCTCGCGACCTTCAAGGCCATGACCTGGTTC GCCAAACCCAAGGTTATTAGTCCAGTTAACTGCGCAAGGAGAGGATGGATTAATATTGAG CCCGATGTTATAACGTGTGAGGCATGTGAGGCACGGCTTCTGTTCTCCACTCCTTCCTCA TGGGCACCGCAGCAAGTTGAAAAGGCTGCTGCTGTTTTTAGCTTGAAGCTGGACAATGGA CATAAACTACTCTGTCCATGGATTGACAACATATGTGATGAATCACTTGCCTTATTTCCA CCAACACCACCTCCTGTTTTAGTTGAGAATTACCACGAGGGTTTCTCCTCACTTCTACGA CTCTCAGCACTTCCAAGAATCTCGTGCTCTTCTCTGGAGAGCATGAAGAAGAGGAGCCCA CAGCTAGAGCAGTTTCTATTGAAACCGTTCTCTTCATCAGTTGTCCTTAAAGGGGGATTT ATACTTACTGAAGATTCAACAATTAAGGATTTGGATCACACTTTTCAAGATGCTGACACA TATTATCAGGCATTGAAGATAATAAGTTTGTGTGGTTGGGAACCCCGCTTGCTACCCTAT GCTGTTGATTGTGGAACTAAATCTCATTCAGATGCAAACTCTTCCTCTACATTGACCCAA CCAGGGCTAATAAATAACTCAATGGAAGATCGGGTTGTTGTTTATGCACCTAATGAAGTT GATGGTTCAACAGTAATTGCAGATGCTCGTCAAGCATATCAGCATTACGATCCATTATCA GTTGTTTTAGATTGTCAATTTTGTGGAGCTTGTGTTGCCTTGTGGCCTTTTTCACTTGTA GAACGACCTCTTCAACTCTTTAAGCTGATATCAGATTCTAGTAGGCAAGATGAGCAAACT GAGGGGCATGCTGGCAGAGTCAGTGGCGCAGGACCTTCAAAGACTGCGAATATTGGTTTT AATTTCACTATTGCTGGTGGTCCTCCGCCAACTAGACAGAATTTTCGGCCAAGAGTTTCC TTACCTGTTGTCAGTCGACATTTGAAAGCTGACTTAAGCTCCCATGGGCATTTTATTTCC TCTGGAAGTGATAACCACATGGTTCCTGTTACTTTGCATGCTTCAGGGCTGACCAAACAC AAAAGAAGCATGGATGAGTCTCATATGTTGGAAGGCAACAATACAATCTCAACTGATGCT GGCACAACCACCAATGGAGCAGATCATCAAAGAGAGAATTCTGTAAATGGCACATCAAAC TTGGTAGCAAACCCTGAACACCAACAAGGGGGTTCACATTCAGATACAAGTAGGGTTACC AGCACAGGAGAAGTTTCCAATGAAGAATCAGAAACAGGTCATGCTGCAATCAAAAGTCAC ACAAGCACAGATGAACTTGGCCAACATGGATCAGATCCTAAATCTTTACCAGTTGAAGAT TCTTCTAATGCTCATGATTTGGCAAAGACTTGCACGAACAATTCCAGGCCAGTTCAGGCT GCCACACTCACAAAATCGTCTAACGATGGGGAAAAGGGCGCATCTCAACCATCAGGAAGC CAAGGCCTGTATGACAAATTGAATGAATTTGATCCTATGAAGCAGCACAGGACTTTCTGC CCTTGGATATGCCCTGATGGTGGTGAAACCTTGCCTGGATGGAGGCTGACACTGCCGGCA TTACTTTCTCAGGACAAAAGAATTGATGAGGATTCACAAGTGGAGCCTCAGATTAGCCTT CTTAGTGAGGAGGATGACCCTGTTACGTCTGTTAGAAAGCTTTTCATGACACCACCTTCA AAGAAGTTGAGGATACATCGGGCAGAGAAGGGCTGA

Peptide Sequence

PEP ID	Os01t0605650-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:23856793:23861718:1 gene:Os01g0605650 transcript:Os01t0605650-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C3HC-like domain containing protein. (Os01t0605650-01)
Sequence	KQRRPLLSSPDDASPLAADPLVSRHPTMATGGGGGGDIGADSERRLKKAMDKLYHFPKPK AGTGPGSSKPSSASTSSALSIGRAGKAAGAGGRRFGMVRGSRLPSQLAAMSAISPPPPCR PWDRADLMRRLATFKAMTWFAKPKVISPVNCARRGWINIEPDVITCEACEARLLFSTPSS WAPQQVEKAAAVFSLKLDNGHKLLCPWIDNICDESLALFPPTPPPVLVENYHEGFSSLLR LSALPRISCSSLESMKKRSPQLEQFLLKPFSSSVVLKGGFILTEDSTIKDLDHTFQDADT YYQALKIISLCGWEPRLLPYAVDCGTKSHSDANSSSTLTQPGLINNSMEDRVVVYAPNEV DGSTVIADARQAYQHYDPLSVVLDCQFCGACVALWPFSLVERPLQLFKLISDSSRQDEQT EGHAGRVSGAGPSKTANIGFNFTIAGGPPPTRQNFRPRVSLPVVSRHLKADLSSHGHFIS SGSDNHMVPVTLHASGLTKHKRSMDESHMLEGNNTISTDAGTTTNGADHQRENSVNGTSN LVANPEHQQGGSHSDTSRVTSTGEVSNEESETGHAAIKSHTSTDELGQHGSDPKSLPVED SSNAHDLAKTCTNNSRPVQAATLTKSSNDGEKGASQPSGSQGLYDKLNEFDPMKQHRTFC PWICPDGGETLPGWRLTLPALLSQDKRIDEDSQVEPQISLLSEEDDPVTSVRKLFMTPPS KKLRIHRAEKG

Transcript Sequence

Transcript ID	Os01t0605650-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:23856793:23861718:1 gene:Os01g0605650 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C3HC-like domain containing protein. (Os01t0605650-01)
Sequence	AAGCAGCGGCGGCCTCTCCTCTCCAGCCCCGACGACGCATCGCCGCTCGCCGCCGATCCA CTCGTCTCGCGCCACCCCACGATGGCCACCGGCGGCGGCGGCGGCGGGGACATCGGCGCC GACTCGGAGCGGCGCCTCAAGAAGGCCATGGACAAGCTCTACCACTTCCCCAAGCCCAAG GCTGGCACGGGGCCCGGCTCCTCCAAGCCCTCTTCCGCATCCACCTCCTCCGCTCTCAGC ATCGGGAGGGCGGGGAAGGCGGCTGGCGCAGGGGGGAGGAGGTTCGGGATGGTGCGGGGC TCGCGGCTCCCGTCGCAGCTCGCGGCCATGTCGGCGATCTCGCCGCCGCCGCCGTGCCGC CCGTGGGACCGCGCCGACCTCATGCGGCGGCTCGCGACCTTCAAGGCCATGACCTGGTTC GCCAAACCCAAGGTTATTAGTCCAGTTAACTGCGCAAGGAGAGGATGGATTAATATTGAG CCCGATGTTATAACGTGTGAGGCATGTGAGGCACGGCTTCTGTTCTCCACTCCTTCCTCA TGGGCACCGCAGCAAGTTGAAAAGGCTGCTGCTGTTTTTAGCTTGAAGCTGGACAATGGA CATAAACTACTCTGTCCATGGATTGACAACATATGTGATGAATCACTTGCCTTATTTCCA CCAACACCACCTCCTGTTTTAGTTGAGAATTACCACGAGGGTTTCTCCTCACTTCTACGA CTCTCAGCACTTCCAAGAATCTCGTGCTCTTCTCTGGAGAGCATGAAGAAGAGGAGCCCA CAGCTAGAGCAGTTTCTATTGAAACCGTTCTCTTCATCAGTTGTCCTTAAAGGGGGATTT ATACTTACTGAAGATTCAACAATTAAGGATTTGGATCACACTTTTCAAGATGCTGACACA TATTATCAGGCATTGAAGATAATAAGTTTGTGTGGTTGGGAACCCCGCTTGCTACCCTAT GCTGTTGATTGTGGAACTAAATCTCATTCAGATGCAAACTCTTCCTCTACATTGACCCAA CCAGGGCTAATAAATAACTCAATGGAAGATCGGGTTGTTGTTTATGCACCTAATGAAGTT GATGGTTCAACAGTAATTGCAGATGCTCGTCAAGCATATCAGCATTACGATCCATTATCA GTTGTTTTAGATTGTCAATTTTGTGGAGCTTGTGTTGCCTTGTGGCCTTTTTCACTTGTA GAACGACCTCTTCAACTCTTTAAGCTGATATCAGATTCTAGTAGGCAAGATGAGCAAACT GAGGGGCATGCTGGCAGAGTCAGTGGCGCAGGACCTTCAAAGACTGCGAATATTGGTTTT AATTTCACTATTGCTGGTGGTCCTCCGCCAACTAGACAGAATTTTCGGCCAAGAGTTTCC TTACCTGTTGTCAGTCGACATTTGAAAGCTGACTTAAGCTCCCATGGGCATTTTATTTCC TCTGGAAGTGATAACCACATGGTTCCTGTTACTTTGCATGCTTCAGGGCTGACCAAACAC AAAAGAAGCATGGATGAGTCTCATATGTTGGAAGGCAACAATACAATCTCAACTGATGCT GGCACAACCACCAATGGAGCAGATCATCAAAGAGAGAATTCTGTAAATGGCACATCAAAC TTGGTAGCAAACCCTGAACACCAACAAGGGGGTTCACATTCAGATACAAGTAGGGTTACC AGCACAGGAGAAGTTTCCAATGAAGAATCAGAAACAGGTCATGCTGCAATCAAAAGTCAC ACAAGCACAGATGAACTTGGCCAACATGGATCAGATCCTAAATCTTTACCAGTTGAAGAT TCTTCTAATGCTCATGATTTGGCAAAGACTTGCACGAACAATTCCAGGCCAGTTCAGGCT GCCACACTCACAAAATCGTCTAACGATGGGGAAAAGGGCGCATCTCAACCATCAGGAAGC CAAGGCCTGTATGACAAATTGAATGAATTTGATCCTATGAAGCAGCACAGGACTTTCTGC CCTTGGATATGCCCTGATGGTGGTGAAACCTTGCCTGGATGGAGGCTGACACTGCCGGCA TTACTTTCTCAGGACAAAAGAATTGATGAGGATTCACAAGTGGAGCCTCAGATTAGCCTT CTTAGTGAGGAGGATGACCCTGTTACGTCTGTTAGAAAGCTTTTCATGACACCACCTTCA AAGAAGTTGAGGATACATCGGGCAGAGAAGGGCTGATAAGTCAGAACTGTATTGGCCAGA GTTGGGTGTTCAGGCGAGTCTCTTCCAATCTGTCTAAACATGTTTGGGACACTGGTCGCG AGCTCTCCACCTGTGGCCATGAGTACTGTGATAGAAGCCAAACTGTTTTCACGGGTTCCC TAGAACCAGATTTGTTGGCGAGACGGCTGAAATCATGAGACACGACCAGCCAACCAGGTC TGCTGAAATCTGTCTGTATGCATTGTATAAATGTCGGGTGGTGGGAACAAGGAAAGAAAA GCGTAAGGATTTGTGGTTTGTTCCAACGGCATGCTTGATTAGGACGAACACTGCCTGGAA ATCTTACTGTAAAGACCATTGGTTATTCCTTCCTTTCATGGTGGTTTAAAGAAAAAAAAT GGAGGGCATTCATTTCCTCCCCCCTGGAATTTTTGTAGCTTATTACTAGTAATGTTTGTG GTTCCAGCACCTGTGTAAACTGTTGCTCCAAAAAGAGTCAAGCTTTGCAGCTGTTTGATG C