Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0600200-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:23569843:23576519:1 gene:Os01g0600200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform. (Os01t0600200-01)
Sequence

ATGAACGGGGAGGCGGTAGTACCCGAGCCCGCCGCGGCGGCGTCGTCCCCGGCACAGGCT
TCGCCTTCGCCGCCCGAGTGGAGGTTCTCGCAGGTGTTCGGCGAGCGCAGCGCTGGGGAG
GAGGTCCAGGATGTGGACATCATATCGGCAATAGAATTCAATAAATCAGGACAGCATCTT
GCCACTGGGGACAGAGGGGGGCGAGTTGTTTTGTTTGAAAGGACAGATGCCAAGGATAAT
GCCTGTAGAAAAGAGGCTGAGAAAGTTGATTATTCCGTTAGCAGGCATCCTGAATTTCGC
TACAAAACTGAGTTTCAAAGCCATGAACCAGAGTTTGATTATCTGAAGAGCTTGGAAATT
GAAGAGAAGATTAACAAGATAAAGTGGTGCCAAACAGCAAATGGAGCATTGTTTCTTCTG
TCCACAAATGATAAGACAATAAAGTTTTGGAAGGTTCAAGAAAAGAAGGTCAAAAAGGTA
TCTGAGATGAATTTGAGCCCTTCAAATGCATCTGCAAATGGTAGACCTGCTGGCAGTAAT
GCTAGTGGTTCGAGCGCATATCTCCCAAATGGTGGCATTTCAAAACCTGTTGGACTCAAT
TCGCTTCGCCTGCCTGTGGTGGTTACAAGCCAAGAAACAAGTCTTTCTGCAAGTTGCCGA
AGAGTCTTTACGCATGCACATGACTACCATATAAACTCTATTTCAAATAACAGTGATGGT
GAGACTTTCATATCAGCAGATGATTTGCGGATAAATCTTTGGAATTTGGAAATTAGCAAC
CAAAGTTTTAACATTATTGATGTTAAACCTACAAACATGGAGGACCTGACTGAGGTGATA
ACATCTGCTGAGTTCCACCCTACTCACTGTAATACATTGGCTTATAGTAGCTCAAAGGGC
TCCATTCGACTTGTTGACCTGAGGCAGTCAGCCCTTTGTGACACTCATTCCCAAGTCTTT
GAGCAGCATGAGGCCCCAGGTTCAAGATCATTCTTTACTGAGATTATAGCCTCGATTTCA
GACATAAAGTTTTCCAAGGATGGGAGACATATTCTCAGTCGTGATTACATGACACTGAAG
CTTTGGGATATTAACATGAACTCTGGTCCAGTTGCAACATTCCAGGTTCATGAGTATTTA
AGGCCCAAGCTATGTGATTTATATGAAAATGATTCCATTTTTGATAAGTTTGAGTGCTGT
CAAAGCGGAGATGGATTGCGAGTAGCAACTGGTTCTTACAGCAACATTTTTCGTGTGTTT
GGTTGTGGCACTGGTAGCAATGAGGCAACGACACTTGAAGCAACTCGAAACCCTACTAGG
AGGCAACTTCAGAATCCCACAAGGCCTGCTAGATCTCTAAGCACTCTGACAAGAGTTGTT
AGACGAGGTGCTGAAAGCACCGGAATAGAGGCCAATGGAAATTCCTACGATCTGAGCACA
AAGTTGCTCCATCTCGCATGGCACCCATCCGAAAATTTAATTGCTTGTGCCGCTGCGAAC
AGCTTGTACATGTACTATGCATAA

Peptide Sequence

PEP ID

Os01t0600200-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:23569843:23576519:1 gene:Os01g0600200 transcript:Os01t0600200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform. (Os01t0600200-01)
Sequence

MNGEAVVPEPAAAASSPAQASPSPPEWRFSQVFGERSAGEEVQDVDIISAIEFNKSGQHL
ATGDRGGRVVLFERTDAKDNACRKEAEKVDYSVSRHPEFRYKTEFQSHEPEFDYLKSLEI
EEKINKIKWCQTANGALFLLSTNDKTIKFWKVQEKKVKKVSEMNLSPSNASANGRPAGSN
ASGSSAYLPNGGISKPVGLNSLRLPVVVTSQETSLSASCRRVFTHAHDYHINSISNNSDG
ETFISADDLRINLWNLEISNQSFNIIDVKPTNMEDLTEVITSAEFHPTHCNTLAYSSSKG
SIRLVDLRQSALCDTHSQVFEQHEAPGSRSFFTEIIASISDIKFSKDGRHILSRDYMTLK
LWDINMNSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCQSGDGLRVATGSYSNIFRVF
GCGTGSNEATTLEATRNPTRRQLQNPTRPARSLSTLTRVVRRGAESTGIEANGNSYDLST
KLLHLAWHPSENLIACAAANSLYMYYA

Transcript Sequence

Transcript ID

Os01t0600200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:23569843:23576519:1 gene:Os01g0600200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform. (Os01t0600200-01)
Sequence

TCTCCTCCCTCCTCTCTCCTCTCCTCGTCTCCTCTTCCTCTCCATTCCATTGGCCATTCC
ATTCCATTCCACCCCCCATGAAACCCCAAACCCTCGTCGGCCTCGCCGCGCTCGCGTAGC
GCACCCGCCCTTCTCCTCTCGCCGGTGGTCCGCCGCCAGCCTCCCCCCACCCGATCCCGC
CGCCCCCCCCGCCTTCACCCCGCCCACGCGGACGCATCCGATCCCGCCGCATCGCCGCGC
GGGGGGGGGGGGGGGGGGGGGAGGGCACGATGAACGGGGAGGCGGTAGTACCCGAGCCCG
CCGCGGCGGCGTCGTCCCCGGCACAGGCTTCGCCTTCGCCGCCCGAGTGGAGGTTCTCGC
AGGTGTTCGGCGAGCGCAGCGCTGGGGAGGAGGTCCAGGATGTGGACATCATATCGGCAA
TAGAATTCAATAAATCAGGACAGCATCTTGCCACTGGGGACAGAGGGGGGCGAGTTGTTT
TGTTTGAAAGGACAGATGCCAAGGATAATGCCTGTAGAAAAGAGGCTGAGAAAGTTGATT
ATTCCGTTAGCAGGCATCCTGAATTTCGCTACAAAACTGAGTTTCAAAGCCATGAACCAG
AGTTTGATTATCTGAAGAGCTTGGAAATTGAAGAGAAGATTAACAAGATAAAGTGGTGCC
AAACAGCAAATGGAGCATTGTTTCTTCTGTCCACAAATGATAAGACAATAAAGTTTTGGA
AGGTTCAAGAAAAGAAGGTCAAAAAGGTATCTGAGATGAATTTGAGCCCTTCAAATGCAT
CTGCAAATGGTAGACCTGCTGGCAGTAATGCTAGTGGTTCGAGCGCATATCTCCCAAATG
GTGGCATTTCAAAACCTGTTGGACTCAATTCGCTTCGCCTGCCTGTGGTGGTTACAAGCC
AAGAAACAAGTCTTTCTGCAAGTTGCCGAAGAGTCTTTACGCATGCACATGACTACCATA
TAAACTCTATTTCAAATAACAGTGATGGTGAGACTTTCATATCAGCAGATGATTTGCGGA
TAAATCTTTGGAATTTGGAAATTAGCAACCAAAGTTTTAACATTATTGATGTTAAACCTA
CAAACATGGAGGACCTGACTGAGGTGATAACATCTGCTGAGTTCCACCCTACTCACTGTA
ATACATTGGCTTATAGTAGCTCAAAGGGCTCCATTCGACTTGTTGACCTGAGGCAGTCAG
CCCTTTGTGACACTCATTCCCAAGTCTTTGAGCAGCATGAGGCCCCAGGTTCAAGATCAT
TCTTTACTGAGATTATAGCCTCGATTTCAGACATAAAGTTTTCCAAGGATGGGAGACATA
TTCTCAGTCGTGATTACATGACACTGAAGCTTTGGGATATTAACATGAACTCTGGTCCAG
TTGCAACATTCCAGGTTCATGAGTATTTAAGGCCCAAGCTATGTGATTTATATGAAAATG
ATTCCATTTTTGATAAGTTTGAGTGCTGTCAAAGCGGAGATGGATTGCGAGTAGCAACTG
GTTCTTACAGCAACATTTTTCGTGTGTTTGGTTGTGGCACTGGTAGCAATGAGGCAACGA
CACTTGAAGCAACTCGAAACCCTACTAGGAGGCAACTTCAGAATCCCACAAGGCCTGCTA
GATCTCTAAGCACTCTGACAAGAGTTGTTAGACGAGGTGCTGAAAGCACCGGAATAGAGG
CCAATGGAAATTCCTACGATCTGAGCACAAAGTTGCTCCATCTCGCATGGCACCCATCCG
AAAATTTAATTGCTTGTGCCGCTGCGAACAGCTTGTACATGTACTATGCATAAACAAGGA
GGGGATAAGAAGAGCGACAGTATTTTTGGTAGCTGCTCCCGGTGAGAAGTGTTTTAACCC
CTGGTGCAGCAGAGCAGGGAGTTGCTGGTAGTGGTGTTTTTTTTGGGCCGGTCACATGCT
GTTCTTTTGAGTGCCATATAGAGCTGTCCAGAGTCCAAGAGGAAGTGACTCGATCATTCC
CGGGAAGCAGCTTGATTCTGATTATTTTTTTTCGAGGGGAAAGGCCTGTCTTTCCCTTAT
AGGTTCATTTAGATTTAAAAGATAAGATTTCTAGTTCGACATTTGGAAGGAACAAGAACT
GTTGGGAATCTGTGGTTAGATGATAAGGGGATGATCTTCCGTTGTATTCATGTTGAAATT
ATGGTCTTGTAACTTCAGGACAGAGGCACTGAAGCTTTTGATAATTTTGTTTTT