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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0600000-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:23554268:23557549:-1 gene:Os01g0600000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Copia-like retroelement pol polyprotein. (Os01t0600000-01)
Sequence

ATGGCGTCGAGGCTGGCGCAGCTACGGTCCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCG
AAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAG
CCACCCACCGTGGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCC
AGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTATGG
AAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAG
CTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTAT
AAGGTCTAG

Peptide Sequence

PEP ID

Os01t0600000-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:23554268:23557549:-1 gene:Os01g0600000 transcript:Os01t0600000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Copia-like retroelement pol polyprotein. (Os01t0600000-01)
Sequence

MASRLAQLRSKAAQASELVSKHGCAYYKEVMEKNKQHVVQPPTVEKCQELSKQLFYTRLA
SLPGRYEAFWKEFDGVKQVWKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGY
KV

Transcript Sequence

Transcript ID

Os01t0600000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:23554268:23557549:-1 gene:Os01g0600000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Copia-like retroelement pol polyprotein. (Os01t0600000-01)
Sequence

ATCCACCTCGCGACCTCTCCTCTCCCCTCCCCGGCGCTTCACCCACGGCGATGGCGTCGA
GGCTGGCGCAGCTACGGTCCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGT
GCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCG
TGGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGTTTGCCAG
GCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTATGGAAGAATAGAA
AGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAGCTTTATGCGT
GGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAAGGTCTAGA
AGAGTTCTGATTAAGACCTGGTTTATAAAATACACTGTTAGCTGATGCTTGTCGAAATGA
CAAAGATACCTCCTGCCTTTTCACAATTTTGTTTATGGAAAGTCTTTCTAGTGCTGGATG
TCAGCCAAGACGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATT
GCCATTTTGGTGTCCTGTAATGTGAAATACTGAAATTCCATCTTGCCCCACCCGTCAAAT
TGTCATTTATTTGTTCTCTTGAATCCATCTCAAACTGCAAGAC