Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0594300-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:23285238:23287222:1 gene:Os01g0594300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to leucine-rich repeat family protein / extensin family protein. (Os01t0594300-01);Pistil-specific extensin-like protein family protein. (Os01t0594300-02)
Sequence	ATGACGACGACGACGACGACGACGAACCACAGCGCCAAGAGCATCCTCCTCCTCGCGCTC CTCCTCGTGCCGCACCTCGCCGCGGCGTCGTCGGGAGATGCGCTGATCAGCCAGCGCCGC CGCCTGCTCGACTACCACGGCGGCGGCGGCGGCCATGGCGGCGGCGACGTGTACGTGGAC CCGTCGTACACGTTCCCGAACGCGCGGCTCCGCGACGCGTACGTGGCGATGCAGGCGTGG AAGCGCGCCGTCCTGTCGGACCCGCACAACGTGACGGGGACGTGGATCGGGCCCGACGTG TGCGCCTACGAGGGCGTGTTCTGCGCGGCGGCGCGGGACGACCCGCACCTCGTCGTCGTC GCCTCCGTCGATCTCAACCACGCCGACATGGCGGGCCACCTCCCCGACGAGCTCGGCCTG CTCGCCGACCTCGCCGTGCTCCACGCCAACTCCAACCGCTTCTGCGGCGCCGTGCCGAGC ACCCTCGAGAGGCTCCACCTCCTCCACGAGCTCGACCTCAGCAACAACCGCCTCGTCGGC GCGTTCCCGGACGTCGTGCTCCGGCTGCCCAGCCTCCGGTACCTCGACCTCCGCTTCAAC GACTTCGAGGGCCCCGTCCCGGCCGAGCTGTTCGACCGCCCGCTCGACGCCATCTTCCTC AACTCCAACCGCCTCCGCTTCCGGATCCCCGACAACGTCGGCAACTCGCCGGCGTCCGTG CTCGTGCTCGCCAACAACGACTTCGGCGGCTGCCTCCCGGCGTCCGTCGCCAACATGTCC GGCACGCTCGACGAGATCATCCTCATGAACACCGGGCTCAAGTCCTGCATCCCGCCGGAG CTCGGCATGCTCACCGGCCTCGCCGTGCTCGACGTCAGCCACAACAGCCTCATGGGCGCC ATCCCCGGCGAGCTCGCCAGGCTCGAGAACATCGAGCAGCTCGACCTCGGGCACAACCGC CTCACCGGCGACGTGCCGGAGGGCATCTGCCACCTGCCGCACCTCCAGAACTTCACCTAC TCCTACAACTTCATCACCGGCGAGCCGCCGGTGTGCATGCACGTCAAGGCGTTCGACGAT CGCCGGAACTGCATCCCCGGCCGCCCCGACCAGAGGCCGGCGGAGCAGTGCCAATTCCAA AACACCCACCACGTCAACTGCGACGCATTCAGGTGCAAGAAGTTCGTCCTCCCGTCGCCT CCGCCACCGCCACCATCGCCGCCGCCGCCGTCTCCTCCACCGCCGTCACCCTCTCCTCCA CCACCTTCACCTCCTCCTCCATCTCCACCACCACCATCTCCATCGCCTCCTCCACCTTCT CCCCCGCCGCCGTCTCCTCCACCACCATCGCCATCGCCGCCTCCACCATCTCCACCGCCT CCATCTCCTCCTCCGCCATCGCCAGTGTACTACAGCTCGCCGCCGCCGCCGTACTACGAG GTTTCACCGGAGGACAGGTACCTCTCGCCGCCGCCACCTCCGGCGTACCACGAGGCGCCG CCACCGCCGTACTACGAGGTGTCGCCGGAGGACAGGTACCTGTCGCCGCCGCCACCTCCA GCCTACCAAGAAACGCCGCCGCCGCCGCCGCAGTACGAGGTGTCACCGGAGGACAGGTAC CTGTCGCCGCCACCTCCATCACCGGTGAAGTGGAAGCTGCCGGTGTACGAGTACTCATCG CCGCCGCCGCCGGCAGCAACATGGAAGCCATAA

Peptide Sequence

PEP ID	Os01t0594300-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:23285238:23287222:1 gene:Os01g0594300 transcript:Os01t0594300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to leucine-rich repeat family protein / extensin family protein. (Os01t0594300-01);Pistil-specific extensin-like protein family protein. (Os01t0594300-02)
Sequence	MTTTTTTTNHSAKSILLLALLLVPHLAAASSGDALISQRRRLLDYHGGGGGHGGGDVYVD PSYTFPNARLRDAYVAMQAWKRAVLSDPHNVTGTWIGPDVCAYEGVFCAAARDDPHLVVV ASVDLNHADMAGHLPDELGLLADLAVLHANSNRFCGAVPSTLERLHLLHELDLSNNRLVG AFPDVVLRLPSLRYLDLRFNDFEGPVPAELFDRPLDAIFLNSNRLRFRIPDNVGNSPASV LVLANNDFGGCLPASVANMSGTLDEIILMNTGLKSCIPPELGMLTGLAVLDVSHNSLMGA IPGELARLENIEQLDLGHNRLTGDVPEGICHLPHLQNFTYSYNFITGEPPVCMHVKAFDD RRNCIPGRPDQRPAEQCQFQNTHHVNCDAFRCKKFVLPSPPPPPPSPPPPSPPPPSPSPP PPSPPPPSPPPPSPSPPPPSPPPPSPPPPSPSPPPPSPPPPSPPPPSPVYYSSPPPPYYE VSPEDRYLSPPPPPAYHEAPPPPYYEVSPEDRYLSPPPPPAYQETPPPPPQYEVSPEDRY LSPPPPSPVKWKLPVYEYSSPPPPAATWKP

Transcript Sequence

Transcript ID	Os01t0594300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:23285238:23287222:1 gene:Os01g0594300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to leucine-rich repeat family protein / extensin family protein. (Os01t0594300-01);Pistil-specific extensin-like protein family protein. (Os01t0594300-02)
Sequence	ATCAAACCTCTCCTCCTCGTCACACACCCCGTCTCGCCGCCGGCGATGCGCAGACGCCAA TGACGACGACGACGACGACGACGAACCACAGCGCCAAGAGCATCCTCCTCCTCGCGCTCC TCCTCGTGCCGCACCTCGCCGCGGCGTCGTCGGGAGATGCGCTGATCAGCCAGCGCCGCC GCCTGCTCGACTACCACGGCGGCGGCGGCGGCCATGGCGGCGGCGACGTGTACGTGGACC CGTCGTACACGTTCCCGAACGCGCGGCTCCGCGACGCGTACGTGGCGATGCAGGCGTGGA AGCGCGCCGTCCTGTCGGACCCGCACAACGTGACGGGGACGTGGATCGGGCCCGACGTGT GCGCCTACGAGGGCGTGTTCTGCGCGGCGGCGCGGGACGACCCGCACCTCGTCGTCGTCG CCTCCGTCGATCTCAACCACGCCGACATGGCGGGCCACCTCCCCGACGAGCTCGGCCTGC TCGCCGACCTCGCCGTGCTCCACGCCAACTCCAACCGCTTCTGCGGCGCCGTGCCGAGCA CCCTCGAGAGGCTCCACCTCCTCCACGAGCTCGACCTCAGCAACAACCGCCTCGTCGGCG CGTTCCCGGACGTCGTGCTCCGGCTGCCCAGCCTCCGGTACCTCGACCTCCGCTTCAACG ACTTCGAGGGCCCCGTCCCGGCCGAGCTGTTCGACCGCCCGCTCGACGCCATCTTCCTCA ACTCCAACCGCCTCCGCTTCCGGATCCCCGACAACGTCGGCAACTCGCCGGCGTCCGTGC TCGTGCTCGCCAACAACGACTTCGGCGGCTGCCTCCCGGCGTCCGTCGCCAACATGTCCG GCACGCTCGACGAGATCATCCTCATGAACACCGGGCTCAAGTCCTGCATCCCGCCGGAGC TCGGCATGCTCACCGGCCTCGCCGTGCTCGACGTCAGCCACAACAGCCTCATGGGCGCCA TCCCCGGCGAGCTCGCCAGGCTCGAGAACATCGAGCAGCTCGACCTCGGGCACAACCGCC TCACCGGCGACGTGCCGGAGGGCATCTGCCACCTGCCGCACCTCCAGAACTTCACCTACT CCTACAACTTCATCACCGGCGAGCCGCCGGTGTGCATGCACGTCAAGGCGTTCGACGATC GCCGGAACTGCATCCCCGGCCGCCCCGACCAGAGGCCGGCGGAGCAGTGCCAATTCCAAA ACACCCACCACGTCAACTGCGACGCATTCAGGTGCAAGAAGTTCGTCCTCCCGTCGCCTC CGCCACCGCCACCATCGCCGCCGCCGCCGTCTCCTCCACCGCCGTCACCCTCTCCTCCAC CACCTTCACCTCCTCCTCCATCTCCACCACCACCATCTCCATCGCCTCCTCCACCTTCTC CCCCGCCGCCGTCTCCTCCACCACCATCGCCATCGCCGCCTCCACCATCTCCACCGCCTC CATCTCCTCCTCCGCCATCGCCAGTGTACTACAGCTCGCCGCCGCCGCCGTACTACGAGG TTTCACCGGAGGACAGGTACCTCTCGCCGCCGCCACCTCCGGCGTACCACGAGGCGCCGC CACCGCCGTACTACGAGGTGTCGCCGGAGGACAGGTACCTGTCGCCGCCGCCACCTCCAG CCTACCAAGAAACGCCGCCGCCGCCGCCGCAGTACGAGGTGTCACCGGAGGACAGGTACC TGTCGCCGCCACCTCCATCACCGGTGAAGTGGAAGCTGCCGGTGTACGAGTACTCATCGC CGCCGCCGCCGGCAGCAACATGGAAGCCATAAAATTAAAATCGATTCTTTCGGGATTTTT TTTTTCACACACTATGATCATACATATTGTTAAATTTGTTGTATGTTGAGTAAAAAAAGG GATGCTAAATCTTTTCTGTTACTACCCCTCCTTCCTGATTTTCTTTTGCTTGTACTGTAT GTATTTTTCTTCTTTTATTTTTTTCTCCTTCTTTGAATGAACAGCAGGAAATCTGCTTTT CCTCC