Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0588200-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:22908302:22910631:-1 gene:Os01g0588200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:voltage-dependent anion channel 3, voltage-dependent anion-selective channel 3 description:Voltage-dependent anion channel. (Os01t0588200-01);Voltage-dependent anion channel. (Os01t0588200-02)
Sequence

ATGGCGCCAGGGCTCTACACCGACATCGGCAAGAAGACCAGAGATCTGCTTTACAGGGAC
TACGGGACGCACCACAAGTTCACCCTCACCACCTGCACCCCCGAGGGCGTCACTATCACA
GCTGCAGGAACAAGGAAAAATGAGTCTGTCTTTGGTGAGCTCCAAACCCAGCTTAAGAAC
AAGAAATTGACTGTTGATGTCAAAGCAAACTCAGAGTCCGATCTTTTAACAACAGTCACG
GTTGATGAGTTTGGAACTCCAGGGTTGAAATCAATTCTTAGTTTGGTAGTTCCAGACCAG
AGGTCAGGGAAGCTTGAACTCCAGTACCTTCATGAATATGCTGGCATCAATGCAAGTGTT
GGCCTGAATTCCAATCCTATGGTTAACCTTTCTGGTGTCTTTGGAAGCAAAGAGCTCTCA
GTTGGTGTTGATGTTGCATTCGACACTGCGACTAGCAATTTCACCAAGTACAATGCTGCA
TTGAGTCTAACCAATTCAGACCTTATTGCTTCTCTGCATCTGAACAATCATGGTGATACC
TTGATTGCATCCTACTACCACCTGGTAAAGCACCATTCGAACACTGCCGTAGGAGCTGAG
CTGTCCCACAGCTTCTCAAGGAATGAGAGCACACTGATCTTTGGGTCCCAGCACTCATTG
GACCCTCACACGACAGTGAAGGCTCGCTTCAACAACTATGGCATGGCCAGCGCGCTCGTC
CAGCATGAATGGCGTCCCAAATCGCTAATCACCATCTCTGGTGAGGTTGACACCAAGGCA
ATTGAGAAGAGCACGAAAGTTGGCTTGTCCTTGGTGCTCAAGCATTGA

Peptide Sequence

PEP ID

Os01t0588200-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:22908302:22910631:-1 gene:Os01g0588200 transcript:Os01t0588200-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:voltage-dependent anion channel 3, voltage-dependent anion-selective channel 3 description:Voltage-dependent anion channel. (Os01t0588200-01);Voltage-dependent anion channel. (Os01t0588200-02)
Sequence

MAPGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKN
KKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASV
GLNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLNNHGDT
LIASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALV
QHEWRPKSLITISGEVDTKAIEKSTKVGLSLVLKH

Transcript Sequence

Transcript ID

Os01t0588200-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:22908302:22910631:-1 gene:Os01g0588200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:voltage-dependent anion channel 3, voltage-dependent anion-selective channel 3 description:Voltage-dependent anion channel. (Os01t0588200-01);Voltage-dependent anion channel. (Os01t0588200-02)
Sequence

CAGCGAAGCGCGACTCCGTTTTAACCGCCTTCGCCGCCGCCGCCGCGATATCGATCCCCT
CCCTCTCGCCGTCGACGCCGTCGGCATCCATGGCGCCAGGGCTCTACACCGACATCGGCA
AGAAGACCAGAGATCTGCTTTACAGGGACTACGGGACGCACCACAAGTTCACCCTCACCA
CCTGCACCCCCGAGGGCGTCACTATCACAGCTGCAGGAACAAGGAAAAATGAGTCTGTCT
TTGGTGAGCTCCAAACCCAGCTTAAGAACAAGAAATTGACTGTTGATGTCAAAGCAAACT
CAGAGTCCGATCTTTTAACAACAGTCACGGTTGATGAGTTTGGAACTCCAGGGTTGAAAT
CAATTCTTAGTTTGGTAGTTCCAGACCAGAGGTCAGGGAAGCTTGAACTCCAGTACCTTC
ATGAATATGCTGGCATCAATGCAAGTGTTGGCCTGAATTCCAATCCTATGGTTAACCTTT
CTGGTGTCTTTGGAAGCAAAGAGCTCTCAGTTGGTGTTGATGTTGCATTCGACACTGCGA
CTAGCAATTTCACCAAGTACAATGCTGCATTGAGTCTAACCAATTCAGACCTTATTGCTT
CTCTGCATCTGAACAATCATGGTGATACCTTGATTGCATCCTACTACCACCTGGTAAAGC
ACCATTCGAACACTGCCGTAGGAGCTGAGCTGTCCCACAGCTTCTCAAGGAATGAGAGCA
CACTGATCTTTGGGTCCCAGCACTCATTGGACCCTCACACGACAGTGAAGGCTCGCTTCA
ACAACTATGGCATGGCCAGCGCGCTCGTCCAGCATGAATGGCGTCCCAAATCGCTAATCA
CCATCTCTGGTGAGGTTGACACCAAGGCAATTGAGAAGAGCACGAAAGTTGGCTTGTCCT
TGGTGCTCAAGCATTGAGTATGTTTTGCATCCTAGGAATTTTTCTTCAGTTCTTGTGGAT
TGGAATAACATGGAAAAAACATGGCCACAGCTACCATTGTGGCTTCATTTTGATCTTGAG
TTCTTTCCCCACCATTACCCTAGGCAAACATTAGCATTGGCTATATATTTTTATCCTCGG
CGCCTGTTGTTAATAATTTTGGGTGATTTGAGACCTATTGCTGAATACTGTCAAATATGA
TGGAGATATCTCTGTGTTCC