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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0587500-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:22888446:22889111:-1 gene:Os01g0587500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heat shock protein Hsp20 domain containing protein. (Os01t0587500-00)
Sequence

ATGTCGACGTGCGTGCCCAAGGGATCGAGATCGGCGAAGGGAGCGGCGGCGGCGGAGGTG
GAGCCCCGCGACGTCGACCTGCAGCCGGAGGTGAAGTGGCACGACGGCGCCGCGGGCTAC
GTCGCCCGCCTCGACCTCGCCGGGTTCAGGAAGGAGGAGTTCCGCGTGCAGGTGGACGGC
GCGGGGCGCGTCACGGTGCGCGGGCAGCGGCCCGCGGGGCACGTCCGCCTCCACCGCGAG
TTCCAGCTGCCGCCGGCGGCCGATGTGGACCGGATCGCCGCCCGCTTCGACGGCGCCACG
CTGTGCCTCACCGTGCCGAAGCGCCCCGCGGGCGGCGCGGCGGAGGTGGTGATGGCGACG
ATGGAGGACGCGAGGGTAGAGGCGGAGATGCAGATGGAGATGGAGAAGGAGCGGGCCAGG
TGGGATCGGGGGAGCGCGATCGCCGCCGCCGTCGCCGCGTTCGCGCTCGGCGTCGTCGTC
TCGCACAGGATCTTCGCCACCAGGAATGGCTCAGCTTGA

Peptide Sequence

PEP ID

Os01t0587500-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:22888446:22889111:-1 gene:Os01g0587500 transcript:Os01t0587500-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heat shock protein Hsp20 domain containing protein. (Os01t0587500-00)
Sequence

MSTCVPKGSRSAKGAAAAEVEPRDVDLQPEVKWHDGAAGYVARLDLAGFRKEEFRVQVDG
AGRVTVRGQRPAGHVRLHREFQLPPAADVDRIAARFDGATLCLTVPKRPAGGAAEVVMAT
MEDARVEAEMQMEMEKERARWDRGSAIAAAVAAFALGVVVSHRIFATRNGSA

Transcript Sequence

Transcript ID

Os01t0587500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:22888446:22889111:-1 gene:Os01g0587500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heat shock protein Hsp20 domain containing protein. (Os01t0587500-00)
Sequence

ATCCATAGCTCCTCCTTGGTCCAGATCGCCCGCGAGGCTATAGCTTAGCATATCGATCCA
CCATGTCGACGTGCGTGCCCAAGGGATCGAGATCGGCGAAGGGAGCGGCGGCGGCGGAGG
TGGAGCCCCGCGACGTCGACCTGCAGCCGGAGGTGAAGTGGCACGACGGCGCCGCGGGCT
ACGTCGCCCGCCTCGACCTCGCCGGGTTCAGGAAGGAGGAGTTCCGCGTGCAGGTGGACG
GCGCGGGGCGCGTCACGGTGCGCGGGCAGCGGCCCGCGGGGCACGTCCGCCTCCACCGCG
AGTTCCAGCTGCCGCCGGCGGCCGATGTGGACCGGATCGCCGCCCGCTTCGACGGCGCCA
CGCTGTGCCTCACCGTGCCGAAGCGCCCCGCGGGCGGCGCGGCGGAGGTGGTGATGGCGA
CGATGGAGGACGCGAGGGTAGAGGCGGAGATGCAGATGGAGATGGAGAAGGAGCGGGCCA
GGTGGGATCGGGGGAGCGCGATCGCCGCCGCCGTCGCCGCGTTCGCGCTCGGCGTCGTCG
TCTCGCACAGGATCTTCGCCACCAGGAATGGCTCAGCTTGATATATATGCATATTGTGGA
ATATGTGATGAGCTCGGAGATTGTTGGAACTAATGGAAGTAAACGACATCACATATTCGC
ATGTTT