Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0583200-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:22625256:22628000:-1 gene:Os01g0583200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2, LYAR-type domain containing protein. (Os01t0583200-01);Zinc finger, C2H2, LYAR-type domain containing protein. (Os01t0583200-02)
Sequence

ATGGTGTGGTTCCAGTGCGAGGACTGCGGGGACGACCTCAAGAAGCCCAAGCTCGCCGGC
CACTTCCGCTCCTGCTCCGCCTACAGGCTCTCCTGCATCGACTGCGGCGAGTTCTTCACC
CAGGAGACCGTCCAGGGCCACACCCAGTGCATCTCCGAGGCTGAGAAGTATGGTCCCAAG
GGACAGAACAAAGCATCCAACAATGCACAGGGCAAGCAAGACAAGCCAAAGCCAAATGCT
GATGTTGATATCAATGTCGGGCTGTCGACATATCCCCCTTGGTTCTGCAGCCTTTGCAAG
ACGACAACCACTAGCAAGCAAACACTCTTATCACATGCAGATGGCAAGAAGCACAGGGCA
AAAGCAAAAGCCTATCATGCTTCTCAGAAGCAAGCAAATGGAGTTGAACAAACTCCCAAG
GAAACTGTTGGTGCACCTGTGACAGAATCAGCACAAGTAAACAATGAGAGGAGTACTGAA
AATGAAAGAGGTGTGGACAACGATGCAGCAAAGAGAAAGAGAGCAAATGATACGACCTCA
GAAGAGCCAGATAACACGAAAAGACAGAACAACTTGAGCGTGAACAGTGGAGAAGTGGTA
CAATCTTCAAATGAAGAGGCAGAAACCAAAGCAAAGAGCAAGGGTACTAAAGATGAATTA
GTTAGTAGTGCCAACCTTAAAGGCAGTAAAAAGCAGAAAATCAAGTGGAAGAAAATTATT
ACCAAAGTACTTCAGACGAATCCAGATGGAGTTCTGAAGTTAAAGAAGCTACAAAAGCTA
GTAACTAAGGAACTTCTGGAATGTGGTCTGACAGAAGATAAGGAGCAGATGCACGCTATC
TTGATGGATAAGATTTCTTCAAGCTCCAGGTTTTCTGTTGATGGCAAGCGCATTAGATTG
GTTGCAAAGGATTGA

Peptide Sequence

PEP ID

Os01t0583200-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:22625256:22628000:-1 gene:Os01g0583200 transcript:Os01t0583200-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2, LYAR-type domain containing protein. (Os01t0583200-01);Zinc finger, C2H2, LYAR-type domain containing protein. (Os01t0583200-02)
Sequence

MVWFQCEDCGDDLKKPKLAGHFRSCSAYRLSCIDCGEFFTQETVQGHTQCISEAEKYGPK
GQNKASNNAQGKQDKPKPNADVDINVGLSTYPPWFCSLCKTTTTSKQTLLSHADGKKHRA
KAKAYHASQKQANGVEQTPKETVGAPVTESAQVNNERSTENERGVDNDAAKRKRANDTTS
EEPDNTKRQNNLSVNSGEVVQSSNEEAETKAKSKGTKDELVSSANLKGSKKQKIKWKKII
TKVLQTNPDGVLKLKKLQKLVTKELLECGLTEDKEQMHAILMDKISSSSRFSVDGKRIRL
VAKD

Transcript Sequence

Transcript ID

Os01t0583200-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:22625256:22628000:-1 gene:Os01g0583200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2, LYAR-type domain containing protein. (Os01t0583200-01);Zinc finger, C2H2, LYAR-type domain containing protein. (Os01t0583200-02)
Sequence

GCACCCAAAACCCTAGCGCCGCCCGCTCGTCGGAGGTGAAGAGGCGGCGGCGGCGGCGGC
AGCGTCGACAATGGTGTGGTTCCAGTGCGAGGACTGCGGGGACGACCTCAAGAAGCCCAA
GCTCGCCGGCCACTTCCGCTCCTGCTCCGCCTACAGGCTCTCCTGCATCGACTGCGGCGA
GTTCTTCACCCAGGAGACCGTCCAGGGCCACACCCAGTGCATCTCCGAGGCTGAGAAGTA
TGGTCCCAAGGGACAGAACAAAGCATCCAACAATGCACAGGGCAAGCAAGACAAGCCAAA
GCCAAATGCTGATGTTGATATCAATGTCGGGCTGTCGACATATCCCCCTTGGTTCTGCAG
CCTTTGCAAGACGACAACCACTAGCAAGCAAACACTCTTATCACATGCAGATGGCAAGAA
GCACAGGGCAAAAGCAAAAGCCTATCATGCTTCTCAGAAGCAAGCAAATGGAGTTGAACA
AACTCCCAAGGAAACTGTTGGTGCACCTGTGACAGAATCAGCACAAGTAAACAATGAGAG
GAGTACTGAAAATGAAAGAGGTGTGGACAACGATGCAGCAAAGAGAAAGAGAGCAAATGA
TACGACCTCAGAAGAGCCAGATAACACGAAAAGACAGAACAACTTGAGCGTGAACAGTGG
AGAAGTGGTACAATCTTCAAATGAAGAGGCAGAAACCAAAGCAAAGAGCAAGGGTACTAA
AGATGAATTAGTTAGTAGTGCCAACCTTAAAGGCAGTAAAAAGCAGAAAATCAAGTGGAA
GAAAATTATTACCAAAGTACTTCAGACGAATCCAGATGGAGTTCTGAAGTTAAAGAAGCT
ACAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACAGAAGATAAGGAGCAGAT
GCACGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTTTCTGTTGATGGCAAGCG
CATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCCCCTGACAGCTGATTCCT
TGTCGACAGATCAATGATGGTCTTACAGTTTGTTATGGCGTAAAGCCGAGTTTTGGTTCT
ATTATTTATACACTGTACTGCCTGGATCATCCATACGATCCGTGGAACTGATGTGAATTT
TGCATTTGATTGTTTTGGGAGCAACAGCCGATCTGATCGCAAACTGATCTTGGCAACACG
GCTTGCTATCAATGACATCAATATTTCATGGCC