Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0575500-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:22163109:22180388:-1 gene:Os01g0575500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-16 description:Similar to predicted protein. (Os01t0575500-01)
Sequence	ATGGCGTCGCGGATCTTCGAGTACTTCGTCGTGTGCGGGATGGGCCCGGAGATCCGGACG CTGGACGGCGTCAAGGGCTACCACGGCGTCGACGACATGTACATGCCGGCCTTCCTCGAC CAGCTCCCGCCCTCCAGCCACGCGCTCTACCCGCCCCCGCCGCCGCAGCTCCCCACCTGT GTTTTGCCAGCTGGAGTAAGGATATACTCTTCTGGGTTGGATGCAAATGATTTCTCAACC TATCCACGGAGTTATCCCATAGTTTTGACAGAGGGAGATGGCTCAAAAATTTATGTTAGT TGTATTGCATTTCGGGATCCAATTTGTGAAGATATTCTTGAAGCTTACCAAATTCCGGCA AACTCTTTTGCTGATAAATGCATATGCTTTGTGTCCCATTCTCCTAGTTTCCAAGTCCTT CGTGATGCCCTAGAAGAAATATTTGTCCTTTGTTTTTCTCCTGCCGGCTGTAGCAAGCCA TTGTGGGACATAATATCACATTTGGTGTCAAAAGTTCCATTACCAACACCAGGAAAGAAT CGTGTTTTATTTGCCATTGAGAATTGCCTTCTTTCTGTGGAGGCTCCTCCAAAAGAATGG CTTCCTCATGCCGATATATCCTTCCAGCCATTGGTGCAGTGCCTAGATGTTGATAAATTA ATACAATTATTTACTGCAGTTCTGCTTGAAAGAAGGATATTGCTGCGATCAAATAAGTAT ACACTGTTGACTCTAGTTTCAGAAGCCATATGCCATTTAATATACCCACTTAGGTGGCAG CATGTCTACATCCCAATAATTTTCTCTAGTGGGGTTGATTACATAGATGCTCCAACACCC TACATGATGGGACTTCATTCAGGTGTTGACACATCCACAGTGACAATGGATGGTGTTGTG GTGGTAGACCTCGAATACAATCGGATTACAACCTCAGAAGAAATCCCTCCAATACCAGAG ACTGAACATAATTTCTTGCGTGGTGAGATATTAAAACTACTACAGCCCAATGTAATGGGT ATTGATTACATGAAAATCAACCTTGGCAGTATGGGTGACCATTCTCTCCGGACTGGCACA AAATCATGGGGGCAGGAACATGATTTTCAGCTTAGGTTGATTTTCTTAAGATTCTTTGCC TTGATTATGAGCGGTTACCGTAACTTCATTGATAATGCTTCACCAAGTGGTTTCAATACT CAAGCATTTCTTAAAAAGCGTTCACGTGCAACTAATCAGCCTGTTGAGTCAATGTCAATG ATTATGCAGTTTATAGAGACACAAGGATTCTTGGATTATCTGGAAAGATGCAACAATGCA GAAGAAAACACCAATAACCTTCTTGATAAGTTGCAGGATGCAACTGGGAGAGGACAAAAC CCTCTGGCAATATTTCCTTCTCATGTTGCTGATCCTGAGATCATAACAATAGCTGATTCT GAGACTGGAGGTTCAGAACCAGGTAAACGATTCTGCTATAAAAGGTTTCCAACAAACGCA AGGACAGAAGAACAAGAAGAAAAACGCAAATCAATTCTAGCAGTAGCTAGTGGGGCTAGT AAGCAAGTACCAAACTCTCCCTCAATTCCAACTATTGGAGGTGGTCCAAAGGTAGAAAGT TTGAGTCCTAGAGAGAGGGCGGCAGAAAGAGAAAGGATGGTTCTAGATATAAAAGTAAAG CTTCAGGGACTGTGGCTTCGTCTTCTGAGACTTGGAGCAACTGAGGATCCCCTTTCATCA TTTGAATATGGCACCATTCTTGCTTTGATTGAGTCTGACGCAGAAGGCATTGGGGGTAGT GGCTTTGTTGAGTGCATCAGAGAGCATATTCATTCGGGTTGGCAATGCCGATTAACTGAT GAACAGTTTATTGCTGTAAAAGAACTGCTCAAGACGGCTATAACTCGTGCCAACTCCCGC AATGACATGCTAACCATCAGAGATGCTCTTGAAGTTTCTGCTGAAATGTATAAGAAGGAC CCAAACAATGTTCAAGACTATGTCCAGCGTCATCTATTGTCCCTGCCAGTATGGGAGGAA CTTCGTTTCTGGGATGGCTATTTTGAATACTTGATGGAGAATTGTTCGAACAAGTCAACA AATTATGTAACATTAGTTACTGCACAGCTTATTGTCATGGCAACTCACATGGCTGGACTG GGACTATCTGATATTGATTCTTGGAATATGATTGAGAAAATAGCTGAGAGAAACAACTTG GGTTACAAGCAGCTCATCAAACTTAGAGCATTGCTCACACATCTGCAACAACTGCGCATT GGCTATTGGGGAGTCGCTACAGGGAAAGGACAACAACCGCCATCATATGGCATGGCTTCC CCCCGTGCGCTTGATGTATCTGATGAAAGCCAACAACCTGCCGAGGCATCTGGATTGGGT CGAAATTGGGTGCAAAGCATGTTTAGTAGGGACAGAAGCTTAAGGGCTAGCTCTTTCAAC CGAACTAATGAAGTGAAGGTTGGTGCTACTGCAGGCAAAACTGACCTACCTGCTGCACAA AAGAAAATTCAAACAAATATGAGGACCCTTAGAGGACATACAGGTGCTATTACTGCTCTT CATTGTGTAACAAGGAAAGAGGTTTGGGATCTTGTTGGTGATCGTGAAGATGCTGGCTTT TTCATCAGTGGAAGCACAGATTGCACGGTAAAAATATGGGATCCAAGTTTGCGTGGTTCT GAACTTCGGACAACACTTAAAGGGCACACTAGGACAATTCGAGCAATTAGTTCAGATCGT GGTAAAATTGTTTCTGGAGCTGATGATCAATCTGTCATAGTCTGGGATAAGCAAACTTTT AAACTTTTGGAGGAACTTAAGGGTCATGATGCACCGGTTAGTTCTGTCCGGATGCTCTCA GGAGAACGTGTTCTTACTGCATCTCATGATGGCACTGTCAAGATGTGGGATGTACGTACC GATACTTGTGTTGCTACTGTGGGTCGTTGTCAAAGTGCAGTTCTCTGTATGGAATATGAT GACTCAACTGGAATTCTAGCAGCTGCTGGAAGAGATGTGGTGGCACATGTCTGGGATATT CGTTCCAGTAAGCAGATGTTCAAGCTCCAAGGGCACACAAAGTGGATAAGATCAATGAGG ATGACGGGTGAAACCATAATAACTGGGAGTGATGATTGGACGGCTAGGGTGTGGTCTCTT ACCCGAGGAACATGTGACGCTGTGTTAGCATGCCATGCTGGCCCAATACTCTGTGTTGAG TACTCACCCTCAGATAAAGGAATCATCACGGGTTCCTCTGATGGGCTTATACGTTTTTGG GAAAATGAAGGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTG TCCATTAGTGCCAGTGATCATTGGCTAGGAATAGGTGCTGCTGACAACTCTATGTCTCTT TTCCATCGTCCGCAAGAAAGATTCGGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGA TGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGGTGAGATGTGTAGCATCGGAC CTGGATCGGAAAAGAATCTGCAGCGGTGGTCGCAACGGACTTCTTCGGCTTTGGGATGCC ACCACGAGTATCTAA

Peptide Sequence

PEP ID	Os01t0575500-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:22163109:22180388:-1 gene:Os01g0575500 transcript:Os01t0575500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-16 description:Similar to predicted protein. (Os01t0575500-01)
Sequence	MASRIFEYFVVCGMGPEIRTLDGVKGYHGVDDMYMPAFLDQLPPSSHALYPPPPPQLPTC VLPAGVRIYSSGLDANDFSTYPRSYPIVLTEGDGSKIYVSCIAFRDPICEDILEAYQIPA NSFADKCICFVSHSPSFQVLRDALEEIFVLCFSPAGCSKPLWDIISHLVSKVPLPTPGKN RVLFAIENCLLSVEAPPKEWLPHADISFQPLVQCLDVDKLIQLFTAVLLERRILLRSNKY TLLTLVSEAICHLIYPLRWQHVYIPIIFSSGVDYIDAPTPYMMGLHSGVDTSTVTMDGVV VVDLEYNRITTSEEIPPIPETEHNFLRGEILKLLQPNVMGIDYMKINLGSMGDHSLRTGT KSWGQEHDFQLRLIFLRFFALIMSGYRNFIDNASPSGFNTQAFLKKRSRATNQPVESMSM IMQFIETQGFLDYLERCNNAEENTNNLLDKLQDATGRGQNPLAIFPSHVADPEIITIADS ETGGSEPGKRFCYKRFPTNARTEEQEEKRKSILAVASGASKQVPNSPSIPTIGGGPKVES LSPRERAAERERMVLDIKVKLQGLWLRLLRLGATEDPLSSFEYGTILALIESDAEGIGGS GFVECIREHIHSGWQCRLTDEQFIAVKELLKTAITRANSRNDMLTIRDALEVSAEMYKKD PNNVQDYVQRHLLSLPVWEELRFWDGYFEYLMENCSNKSTNYVTLVTAQLIVMATHMAGL GLSDIDSWNMIEKIAERNNLGYKQLIKLRALLTHLQQLRIGYWGVATGKGQQPPSYGMAS PRALDVSDESQQPAEASGLGRNWVQSMFSRDRSLRASSFNRTNEVKVGATAGKTDLPAAQ KKIQTNMRTLRGHTGAITALHCVTRKEVWDLVGDREDAGFFISGSTDCTVKIWDPSLRGS ELRTTLKGHTRTIRAISSDRGKIVSGADDQSVIVWDKQTFKLLEELKGHDAPVSSVRMLS GERVLTASHDGTVKMWDVRTDTCVATVGRCQSAVLCMEYDDSTGILAAAGRDVVAHVWDI RSSKQMFKLQGHTKWIRSMRMTGETIITGSDDWTARVWSLTRGTCDAVLACHAGPILCVE YSPSDKGIITGSSDGLIRFWENEGGIRCVKNLTLHSASVLSISASDHWLGIGAADNSMSL FHRPQERFGGFSNTGSKVAGWQLYRTPQKTAAMVRCVASDLDRKRICSGGRNGLLRLWDA TTSI

Transcript Sequence

Transcript ID	Os01t0575500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:22163109:22180388:-1 gene:Os01g0575500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-16 description:Similar to predicted protein. (Os01t0575500-01)
Sequence	GCAGCGATAGAGAGAGAGAGAGAGAGAGAGAGCGCGCTCTCGCGTCGCGAACAACCAGCC GCCGCGCCGTGGCGCCCCCTCCCCTCCCCTCCCTCCGGTGAGCAGCGCGCGGGCGCGGGG CGATCCCGGCGGGGGGATCCGGCGGCGGTGATGGCGTCGCGGATCTTCGAGTACTTCGTC GTGTGCGGGATGGGCCCGGAGATCCGGACGCTGGACGGCGTCAAGGGCTACCACGGCGTC GACGACATGTACATGCCGGCCTTCCTCGACCAGCTCCCGCCCTCCAGCCACGCGCTCTAC CCGCCCCCGCCGCCGCAGCTCCCCACCTGTGTTTTGCCAGCTGGAGTAAGGATATACTCT TCTGGGTTGGATGCAAATGATTTCTCAACCTATCCACGGAGTTATCCCATAGTTTTGACA GAGGGAGATGGCTCAAAAATTTATGTTAGTTGTATTGCATTTCGGGATCCAATTTGTGAA GATATTCTTGAAGCTTACCAAATTCCGGCAAACTCTTTTGCTGATAAATGCATATGCTTT GTGTCCCATTCTCCTAGTTTCCAAGTCCTTCGTGATGCCCTAGAAGAAATATTTGTCCTT TGTTTTTCTCCTGCCGGCTGTAGCAAGCCATTGTGGGACATAATATCACATTTGGTGTCA AAAGTTCCATTACCAACACCAGGAAAGAATCGTGTTTTATTTGCCATTGAGAATTGCCTT CTTTCTGTGGAGGCTCCTCCAAAAGAATGGCTTCCTCATGCCGATATATCCTTCCAGCCA TTGGTGCAGTGCCTAGATGTTGATAAATTAATACAATTATTTACTGCAGTTCTGCTTGAA AGAAGGATATTGCTGCGATCAAATAAGTATACACTGTTGACTCTAGTTTCAGAAGCCATA TGCCATTTAATATACCCACTTAGGTGGCAGCATGTCTACATCCCAATAATTTTCTCTAGT GGGGTTGATTACATAGATGCTCCAACACCCTACATGATGGGACTTCATTCAGGTGTTGAC ACATCCACAGTGACAATGGATGGTGTTGTGGTGGTAGACCTCGAATACAATCGGATTACA ACCTCAGAAGAAATCCCTCCAATACCAGAGACTGAACATAATTTCTTGCGTGGTGAGATA TTAAAACTACTACAGCCCAATGTAATGGGTATTGATTACATGAAAATCAACCTTGGCAGT ATGGGTGACCATTCTCTCCGGACTGGCACAAAATCATGGGGGCAGGAACATGATTTTCAG CTTAGGTTGATTTTCTTAAGATTCTTTGCCTTGATTATGAGCGGTTACCGTAACTTCATT GATAATGCTTCACCAAGTGGTTTCAATACTCAAGCATTTCTTAAAAAGCGTTCACGTGCA ACTAATCAGCCTGTTGAGTCAATGTCAATGATTATGCAGTTTATAGAGACACAAGGATTC TTGGATTATCTGGAAAGATGCAACAATGCAGAAGAAAACACCAATAACCTTCTTGATAAG TTGCAGGATGCAACTGGGAGAGGACAAAACCCTCTGGCAATATTTCCTTCTCATGTTGCT GATCCTGAGATCATAACAATAGCTGATTCTGAGACTGGAGGTTCAGAACCAGGTAAACGA TTCTGCTATAAAAGGTTTCCAACAAACGCAAGGACAGAAGAACAAGAAGAAAAACGCAAA TCAATTCTAGCAGTAGCTAGTGGGGCTAGTAAGCAAGTACCAAACTCTCCCTCAATTCCA ACTATTGGAGGTGGTCCAAAGGTAGAAAGTTTGAGTCCTAGAGAGAGGGCGGCAGAAAGA GAAAGGATGGTTCTAGATATAAAAGTAAAGCTTCAGGGACTGTGGCTTCGTCTTCTGAGA CTTGGAGCAACTGAGGATCCCCTTTCATCATTTGAATATGGCACCATTCTTGCTTTGATT GAGTCTGACGCAGAAGGCATTGGGGGTAGTGGCTTTGTTGAGTGCATCAGAGAGCATATT CATTCGGGTTGGCAATGCCGATTAACTGATGAACAGTTTATTGCTGTAAAAGAACTGCTC AAGACGGCTATAACTCGTGCCAACTCCCGCAATGACATGCTAACCATCAGAGATGCTCTT GAAGTTTCTGCTGAAATGTATAAGAAGGACCCAAACAATGTTCAAGACTATGTCCAGCGT CATCTATTGTCCCTGCCAGTATGGGAGGAACTTCGTTTCTGGGATGGCTATTTTGAATAC TTGATGGAGAATTGTTCGAACAAGTCAACAAATTATGTAACATTAGTTACTGCACAGCTT ATTGTCATGGCAACTCACATGGCTGGACTGGGACTATCTGATATTGATTCTTGGAATATG ATTGAGAAAATAGCTGAGAGAAACAACTTGGGTTACAAGCAGCTCATCAAACTTAGAGCA TTGCTCACACATCTGCAACAACTGCGCATTGGCTATTGGGGAGTCGCTACAGGGAAAGGA CAACAACCGCCATCATATGGCATGGCTTCCCCCCGTGCGCTTGATGTATCTGATGAAAGC CAACAACCTGCCGAGGCATCTGGATTGGGTCGAAATTGGGTGCAAAGCATGTTTAGTAGG GACAGAAGCTTAAGGGCTAGCTCTTTCAACCGAACTAATGAAGTGAAGGTTGGTGCTACT GCAGGCAAAACTGACCTACCTGCTGCACAAAAGAAAATTCAAACAAATATGAGGACCCTT AGAGGACATACAGGTGCTATTACTGCTCTTCATTGTGTAACAAGGAAAGAGGTTTGGGAT CTTGTTGGTGATCGTGAAGATGCTGGCTTTTTCATCAGTGGAAGCACAGATTGCACGGTA AAAATATGGGATCCAAGTTTGCGTGGTTCTGAACTTCGGACAACACTTAAAGGGCACACT AGGACAATTCGAGCAATTAGTTCAGATCGTGGTAAAATTGTTTCTGGAGCTGATGATCAA TCTGTCATAGTCTGGGATAAGCAAACTTTTAAACTTTTGGAGGAACTTAAGGGTCATGAT GCACCGGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTTCTTACTGCATCTCATGAT GGCACTGTCAAGATGTGGGATGTACGTACCGATACTTGTGTTGCTACTGTGGGTCGTTGT CAAAGTGCAGTTCTCTGTATGGAATATGATGACTCAACTGGAATTCTAGCAGCTGCTGGA AGAGATGTGGTGGCACATGTCTGGGATATTCGTTCCAGTAAGCAGATGTTCAAGCTCCAA GGGCACACAAAGTGGATAAGATCAATGAGGATGACGGGTGAAACCATAATAACTGGGAGT GATGATTGGACGGCTAGGGTGTGGTCTCTTACCCGAGGAACATGTGACGCTGTGTTAGCA TGCCATGCTGGCCCAATACTCTGTGTTGAGTACTCACCCTCAGATAAAGGAATCATCACG GGTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGGAGGAATAAGATGTGTCAAG AACCTTACGCTTCACTCGGCATCTGTTCTGTCCATTAGTGCCAGTGATCATTGGCTAGGA ATAGGTGCTGCTGACAACTCTATGTCTCTTTTCCATCGTCCGCAAGAAAGATTCGGGGGT TTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACT GCTGCTATGGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT CGCAACGGACTTCTTCGGCTTTGGGATGCCACCACGAGTATCTAAGTTATACCAGGACCC ATGTCCATGTAAAGAAAATGTCAATTGCACTGTTGTGTTTGTTGTATGTTATTAATTTTT TAGTGGCCCTCTGTATAAATAATATAGGAACTCTATATAAGTTCCATCCATTTTTGTAAT CTCAAAAGACCTGCCCAGATACCTCGAGTGGAATTTTGTGTATATTTAGAAGAAAATTTA TTGTTCTAGCC