Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0566500-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:21665759:21668304:-1 gene:Os01g0566500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:carotenoid cleavage dioxygenase 8a, CATOTENOID DIOXYGENASE 8a, D10like description:Similar to Dioxygenase RAMOSUS1. (Os01t0566500-01)
Sequence	ATGGCGACCTCCCTGACCCTGATCGCCACACCATGCACGGCTCCTAGATCATCCTCGTCC TTCGCACTCGCTCCACGGCTGCCGCCTCGTTGCAGCAACGCGACTGCAGCACGTCGCCGC GCCGTGAGGGCAACCACGCTGCAATCGGATCAGGAACCTGCAGGATCAGGAGACAGCGGC GCCACGACGACGAAGCTGTCTGCCTCGACCAGCGTCCGCCAAGAACGCTGGGAAGGCGAC CTGCCCATCGAGGGATGCCTCCCTCCTTGGCTGAATGGCACGTACATCAGGAACGGGCCG GGGATGTGGGACGTCGGGGAGCACGCGTTCCACCACCTGTTCGACGGCTACGCGACGCTC GTCCGCGTCTCCTTCCGCGGCGGGGGTGGTGCGCGCGCCACGGGGGCGCACCGGCAGATC GAGTCGGAGGCGTACAGGGCCGCCGTGGCGCGCGGCCGCCCGGTCCTCCGCGAGTTCTCC CACTGCCCCGCGCCGGCCAAGAGCCTGCTCCACCGCTTCGGCGATCTCGTCGGCCTCGTC ACCGGCGCCGCGCTCACCGACAACCCCAACAGCGCCGTGCTGCCGCTCGGCGACGGCCGG GTGATGTGCCTCACCGAGACCACCAAGAGCTCCGTCCTCATCGACCCGGACACGCTCGAG ACGGTGGGCAGGTTCCGGTACACGGACAGGCTGGGTGGCATGGTGCAGTCGGCGCACCCG ATCGTGACCGACACGGAGTTCCTGACGCTGCTGCCGGACCTCGTCCGTCCGGGCCACCTC GTCGTGAGGATGGAGGCCGGGAGCAACGAGAGGAAGGTGATCGGGAGAATGGACTGCCGC GGCGGGCCGTCGCCCGGGTGGCTGCACTCGTTCGCCGTCACGGAGAAGTACGCCGTCGTG CCGGAGATGCCGCTCCGGTACTCCTCCGCCAGCCTGCTCGCCTCCGAGCTCGCCCCGTTC TACGCCTTCGACTGGGTCCCGGCGTCCGGCAGCTACATGCACGTCATGTGCAAGTCCACC GGCAAGACCGTGGCGAGCGTGGAGGTGCCTCCTTTCATGGCGATCCACTTCATCAACGCA TACGAGGAGGAAGGCGACGAGGCCGCCGTCGTTGTCGACTGCTGTGAGCACTACGGTGAC CCTGCCATCATCGAGACACTCGTCCTCAGTAGACTGAGATTGTTAAGGGGCAAGGACGTT TTACCTAACGCCAGGGTGGGGCGGTTCAGGATCCCGCTGGATGGGAGCCCGTTCGGCGAA CTTGAGACGGCGCTGGACCCGGAGGAGCACGGGCGGGGGATGGACATGTGCAGCATCAAC CCGGCGCGCCTCGGCAGGAAGTACCAGTATGCCTACGCGTGCGGCGCGCGTCGCCCGTGC AACTTCCCCAACACGCTCACCAAGATCGACCTGGTGGAGAAGAAGGCCAAGAGCTGGCAC GAGGAGGGCTCCGTGCCGTCCGAGCCTTTCTTCGTCGCGAGGCCGGGAGCCACCGACGAA GACGATGGAGTGGTGATATCTATTGTAAGCTCCGACGATGGCGAAGGGTACGCACTGGTG CTAGACGCGACCACGTTTGAGGAGATTGCGCGCGTCAGGTTCCCCTACGGATTGCCCTAC GGCTTCCATGGCTGCTGGATCCCTGCGACGGAAGAGTGA

Peptide Sequence

PEP ID	Os01t0566500-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:21665759:21668304:-1 gene:Os01g0566500 transcript:Os01t0566500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:carotenoid cleavage dioxygenase 8a, CATOTENOID DIOXYGENASE 8a, D10like description:Similar to Dioxygenase RAMOSUS1. (Os01t0566500-01)
Sequence	MATSLTLIATPCTAPRSSSSFALAPRLPPRCSNATAARRRAVRATTLQSDQEPAGSGDSG ATTTKLSASTSVRQERWEGDLPIEGCLPPWLNGTYIRNGPGMWDVGEHAFHHLFDGYATL VRVSFRGGGGARATGAHRQIESEAYRAAVARGRPVLREFSHCPAPAKSLLHRFGDLVGLV TGAALTDNPNSAVLPLGDGRVMCLTETTKSSVLIDPDTLETVGRFRYTDRLGGMVQSAHP IVTDTEFLTLLPDLVRPGHLVVRMEAGSNERKVIGRMDCRGGPSPGWLHSFAVTEKYAVV PEMPLRYSSASLLASELAPFYAFDWVPASGSYMHVMCKSTGKTVASVEVPPFMAIHFINA YEEEGDEAAVVVDCCEHYGDPAIIETLVLSRLRLLRGKDVLPNARVGRFRIPLDGSPFGE LETALDPEEHGRGMDMCSINPARLGRKYQYAYACGARRPCNFPNTLTKIDLVEKKAKSWH EEGSVPSEPFFVARPGATDEDDGVVISIVSSDDGEGYALVLDATTFEEIARVRFPYGLPY GFHGCWIPATEE

Transcript Sequence

Transcript ID	Os01t0566500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:21665759:21668304:-1 gene:Os01g0566500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:carotenoid cleavage dioxygenase 8a, CATOTENOID DIOXYGENASE 8a, D10like description:Similar to Dioxygenase RAMOSUS1. (Os01t0566500-01)
Sequence	AGCCGCCATTCGTGCACAGGCATCATGGCGACCTCCCTGACCCTGATCGCCACACCATGC ACGGCTCCTAGATCATCCTCGTCCTTCGCACTCGCTCCACGGCTGCCGCCTCGTTGCAGC AACGCGACTGCAGCACGTCGCCGCGCCGTGAGGGCAACCACGCTGCAATCGGATCAGGAA CCTGCAGGATCAGGAGACAGCGGCGCCACGACGACGAAGCTGTCTGCCTCGACCAGCGTC CGCCAAGAACGCTGGGAAGGCGACCTGCCCATCGAGGGATGCCTCCCTCCTTGGCTGAAT GGCACGTACATCAGGAACGGGCCGGGGATGTGGGACGTCGGGGAGCACGCGTTCCACCAC CTGTTCGACGGCTACGCGACGCTCGTCCGCGTCTCCTTCCGCGGCGGGGGTGGTGCGCGC GCCACGGGGGCGCACCGGCAGATCGAGTCGGAGGCGTACAGGGCCGCCGTGGCGCGCGGC CGCCCGGTCCTCCGCGAGTTCTCCCACTGCCCCGCGCCGGCCAAGAGCCTGCTCCACCGC TTCGGCGATCTCGTCGGCCTCGTCACCGGCGCCGCGCTCACCGACAACCCCAACAGCGCC GTGCTGCCGCTCGGCGACGGCCGGGTGATGTGCCTCACCGAGACCACCAAGAGCTCCGTC CTCATCGACCCGGACACGCTCGAGACGGTGGGCAGGTTCCGGTACACGGACAGGCTGGGT GGCATGGTGCAGTCGGCGCACCCGATCGTGACCGACACGGAGTTCCTGACGCTGCTGCCG GACCTCGTCCGTCCGGGCCACCTCGTCGTGAGGATGGAGGCCGGGAGCAACGAGAGGAAG GTGATCGGGAGAATGGACTGCCGCGGCGGGCCGTCGCCCGGGTGGCTGCACTCGTTCGCC GTCACGGAGAAGTACGCCGTCGTGCCGGAGATGCCGCTCCGGTACTCCTCCGCCAGCCTG CTCGCCTCCGAGCTCGCCCCGTTCTACGCCTTCGACTGGGTCCCGGCGTCCGGCAGCTAC ATGCACGTCATGTGCAAGTCCACCGGCAAGACCGTGGCGAGCGTGGAGGTGCCTCCTTTC ATGGCGATCCACTTCATCAACGCATACGAGGAGGAAGGCGACGAGGCCGCCGTCGTTGTC GACTGCTGTGAGCACTACGGTGACCCTGCCATCATCGAGACACTCGTCCTCAGTAGACTG AGATTGTTAAGGGGCAAGGACGTTTTACCTAACGCCAGGGTGGGGCGGTTCAGGATCCCG CTGGATGGGAGCCCGTTCGGCGAACTTGAGACGGCGCTGGACCCGGAGGAGCACGGGCGG GGGATGGACATGTGCAGCATCAACCCGGCGCGCCTCGGCAGGAAGTACCAGTATGCCTAC GCGTGCGGCGCGCGTCGCCCGTGCAACTTCCCCAACACGCTCACCAAGATCGACCTGGTG GAGAAGAAGGCCAAGAGCTGGCACGAGGAGGGCTCCGTGCCGTCCGAGCCTTTCTTCGTC GCGAGGCCGGGAGCCACCGACGAAGACGATGGAGTGGTGATATCTATTGTAAGCTCCGAC GATGGCGAAGGGTACGCACTGGTGCTAGACGCGACCACGTTTGAGGAGATTGCGCGCGTC AGGTTCCCCTACGGATTGCCCTACGGCTTCCATGGCTGCTGGATCCCTGCGACGGAAGAG TGACTGAGAAGGAAAAACCCGTATGAATATCTGTAGCCGAGAAGACTAGGATCATATGTA TGAGCATCCATGTAACTCGTGGGGATTTTTATTTTAAGCACTACTGG