Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0562400-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:21381884:21389642:1 gene:Os01g0562400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FK506 binding protein 57 description:Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain domain containing protein. (Os01t0562400-01)
Sequence

GTCCTGCCGTGGAGGTCGAATCCCCGGAGGGGAACGAGCCGGCGAGGTGGGATTCGGCCG
GCCGCATACACGCGCCTCCAAGTCCACTTTACAGGAAAAAGACTTGATGGCACTTGGTTT
GCATCCACCAGAGAAGATGGTGTGCCTCTGACTTTTATATTAGGACAAGAGAATGTGATG
CGAGGCTTCAGTATGGCTGTTAGCTCAATGCAAGCAGGGGAGAAAGCTGTGTTCACCATC
CCTCCAGAATTAGCAGGCACCAAGTCTCGGTGTCCAGTTGATATCCCAGGGAATATTGCC
CCCAATGAAGCACTGCGGTTTGATATTGAGCTCATCTCTCTTGTCACCATAACTGACATC
CTCGATGATGAAGGCATACTGAAAAAGATCATCAAGCGTGGACTGGGGAGCGATAAGCCT
TGTGATTTGGATGAAGCACTTGTGAACTACAATGCTTGCCTGGAGGATGGGATGTCAGTG
TCCATGTCTGAAGGTATTGAGTTCAACCTTGCGGAAGGCTTCTTTTGTCCTGCATTTGCA
CGTGCTGTGGAGACTATGACAGAAGGAGAGGAAGCTGTTCTCATTGTTAAACCTGAATAT
GGTTTTGGTGAACGGGGTAGACCATCCATAGGGGATGAAGCCGGTGTGCCACCTGATGCA
ACTCTCTATGTGTACCTTCAATTGATGTCATGGAAAACAGTGAGGCACATTGGAGAGAAT
GGGACAATCCTCAAGAAAACCCTTTGTAGAGGAAATTTGGAAGGACAGCAGACAGAGAAT
GAAGCAGTGGTCGGAGTTCGACTGATTGGTAAACTGCAAGATGGGGCTGTATTTGATCAG
AGGGGCCACGAAGGAGATGAGCCGTTCAAGTTCATGGTTGACGAAGAGCAGGTTAGCGAA
GGCCTAGAGGAAGCTGTTCTTACAATGCGGGAGGGAGAGGTCTCCTTGTTCACCATTCCC
CCCCATCGTGTGCAGGATCAACTTTTGGTTGTCCCTGTTGGCTCTTCCGTGACCTACGAA
ATCGAGCTTGTCTCAGTTGTAAATGACAAGCCTCCCCGGCTCATGAGTCAAGCAGAGACC
ATCGAAGCTGCAGCTGAAAAGGAAAAGGAGGGAGACAAACTGTTCAGCTCAAGCAAATTT
TTGAGAGCTTACAGGAGATATTACAAGGCCAGGCAGATCATACTCCTGCGCTTTGGACGA
GGAGAAACAGATGAAGAAATTAAACAAATGTTGATTTCCCTTACCTTCAAAGCTGCTGAG
TGCGCGAATCAGCTTCAACGCTATGAACAAGCATACCACCGCTATCGTGAGATATTGGAG
TATGACCCTGGAAATGTGAAAGCACGGGAAATGACAGGGCGGGCATTCCCTGAAGCATCT
CTTGGAATAGACACTGCCGCAATGCATAGGGGCTTGGATCAGCCATTTAGGCCGAAAGAA
GAGTTTCGCGTGTGCGGCGGCTACATGACCCCGGAGTTCTCTGAGATGAGACTGAAGCAA
GGGCATAAATACCATGGAAGTATAAATATTTTTGTCCCTCCTATCCCAAGACCAGAGACC
AATGCAAATCAAGCTGTTCCAGCTGCTCCTACAGGCCACAGGCTCACACACAGCCCTACT
ACACCTCCAGGTCCAAATAATGAGAAAAGAAACAGAAGCAGTCGTGTTCCAGTCGCTGCC
AGGAAGGGGCTAGCTTCTTGCTTCAGATGCATCTCTTCAGATTGTAACTGA

Peptide Sequence

PEP ID

Os01t0562400-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:21381884:21389642:1 gene:Os01g0562400 transcript:Os01t0562400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FK506 binding protein 57 description:Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain domain containing protein. (Os01t0562400-01)
Sequence

VLPWRSNPRRGTSRRGGIRPAAYTRLQVHFTGKRLDGTWFASTREDGVPLTFILGQENVM
RGFSMAVSSMQAGEKAVFTIPPELAGTKSRCPVDIPGNIAPNEALRFDIELISLVTITDI
LDDEGILKKIIKRGLGSDKPCDLDEALVNYNACLEDGMSVSMSEGIEFNLAEGFFCPAFA
RAVETMTEGEEAVLIVKPEYGFGERGRPSIGDEAGVPPDATLYVYLQLMSWKTVRHIGEN
GTILKKTLCRGNLEGQQTENEAVVGVRLIGKLQDGAVFDQRGHEGDEPFKFMVDEEQVSE
GLEEAVLTMREGEVSLFTIPPHRVQDQLLVVPVGSSVTYEIELVSVVNDKPPRLMSQAET
IEAAAEKEKEGDKLFSSSKFLRAYRRYYKARQIILLRFGRGETDEEIKQMLISLTFKAAE
CANQLQRYEQAYHRYREILEYDPGNVKAREMTGRAFPEASLGIDTAAMHRGLDQPFRPKE
EFRVCGGYMTPEFSEMRLKQGHKYHGSINIFVPPIPRPETNANQAVPAAPTGHRLTHSPT
TPPGPNNEKRNRSSRVPVAARKGLASCFRCISSDCN

Transcript Sequence

Transcript ID

Os01t0562400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:21381884:21389642:1 gene:Os01g0562400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FK506 binding protein 57 description:Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain domain containing protein. (Os01t0562400-01)
Sequence

ACGGCCAATCTCTGCCCCTTGCTACCTCCCGCGGCGCCGCCGCCGCCGATCAGCACCAGC
CGAAGTCCAGGCAGGCGGCTCGCAGGAGCAGCTCAGCAGCGGCGAGGACCAAGTCGTCAA
GTCGACGCGGAGGCAATGCACTAATGCAGAGGCCAAATCGAAGGAGGCGGCGGGGTAGGT
CCTGCCGTGGAGGTCGAATCCCCGGAGGGGAACGAGCCGGCGAGGTGGGATTCGGCCGGC
CGCATACACGCGCCTCCAAGTCCACTTTACAGGAAAAAGACTTGATGGCACTTGGTTTGC
ATCCACCAGAGAAGATGGTGTGCCTCTGACTTTTATATTAGGACAAGAGAATGTGATGCG
AGGCTTCAGTATGGCTGTTAGCTCAATGCAAGCAGGGGAGAAAGCTGTGTTCACCATCCC
TCCAGAATTAGCAGGCACCAAGTCTCGGTGTCCAGTTGATATCCCAGGGAATATTGCCCC
CAATGAAGCACTGCGGTTTGATATTGAGCTCATCTCTCTTGTCACCATAACTGACATCCT
CGATGATGAAGGCATACTGAAAAAGATCATCAAGCGTGGACTGGGGAGCGATAAGCCTTG
TGATTTGGATGAAGCACTTGTGAACTACAATGCTTGCCTGGAGGATGGGATGTCAGTGTC
CATGTCTGAAGGTATTGAGTTCAACCTTGCGGAAGGCTTCTTTTGTCCTGCATTTGCACG
TGCTGTGGAGACTATGACAGAAGGAGAGGAAGCTGTTCTCATTGTTAAACCTGAATATGG
TTTTGGTGAACGGGGTAGACCATCCATAGGGGATGAAGCCGGTGTGCCACCTGATGCAAC
TCTCTATGTGTACCTTCAATTGATGTCATGGAAAACAGTGAGGCACATTGGAGAGAATGG
GACAATCCTCAAGAAAACCCTTTGTAGAGGAAATTTGGAAGGACAGCAGACAGAGAATGA
AGCAGTGGTCGGAGTTCGACTGATTGGTAAACTGCAAGATGGGGCTGTATTTGATCAGAG
GGGCCACGAAGGAGATGAGCCGTTCAAGTTCATGGTTGACGAAGAGCAGGTTAGCGAAGG
CCTAGAGGAAGCTGTTCTTACAATGCGGGAGGGAGAGGTCTCCTTGTTCACCATTCCCCC
CCATCGTGTGCAGGATCAACTTTTGGTTGTCCCTGTTGGCTCTTCCGTGACCTACGAAAT
CGAGCTTGTCTCAGTTGTAAATGACAAGCCTCCCCGGCTCATGAGTCAAGCAGAGACCAT
CGAAGCTGCAGCTGAAAAGGAAAAGGAGGGAGACAAACTGTTCAGCTCAAGCAAATTTTT
GAGAGCTTACAGGAGATATTACAAGGCCAGGCAGATCATACTCCTGCGCTTTGGACGAGG
AGAAACAGATGAAGAAATTAAACAAATGTTGATTTCCCTTACCTTCAAAGCTGCTGAGTG
CGCGAATCAGCTTCAACGCTATGAACAAGCATACCACCGCTATCGTGAGATATTGGAGTA
TGACCCTGGAAATGTGAAAGCACGGGAAATGACAGGGCGGGCATTCCCTGAAGCATCTCT
TGGAATAGACACTGCCGCAATGCATAGGGGCTTGGATCAGCCATTTAGGCCGAAAGAAGA
GTTTCGCGTGTGCGGCGGCTACATGACCCCGGAGTTCTCTGAGATGAGACTGAAGCAAGG
GCATAAATACCATGGAAGTATAAATATTTTTGTCCCTCCTATCCCAAGACCAGAGACCAA
TGCAAATCAAGCTGTTCCAGCTGCTCCTACAGGCCACAGGCTCACACACAGCCCTACTAC
ACCTCCAGGTCCAAATAATGAGAAAAGAAACAGAAGCAGTCGTGTTCCAGTCGCTGCCAG
GAAGGGGCTAGCTTCTTGCTTCAGATGCATCTCTTCAGATTGTAACTGAAGACATGTTCC
CTGAAAGCAATAAAGAAAAAAAATCTTGACCAGCAACAGGGCTGTACTAACACTAGTTTA
TTTTTTTTCGAACTAATAATTTAACTTAGGTCGAAATTAATGACGATTCTATGG