Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0559600-02
CDS Infomation	cds chromosome:IRGSP-1.0:1:21232521:21234906:1 gene:Os01g0559600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:vacuolar processing enzyme 2, legumain 1 description:Similar to C13 endopeptidase NP1 precursor. (Os01t0559600-01);Similar to Asparaginyl endopeptidase. (Os01t0559600-02)
Sequence	TTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTGCCAAATGGCATC AATGTTTATGCCACCACTGCATCAAACGCTGATGAGAGCAGCTGGGGAACATACTGCCCT GGGGAGTACCCGAGCCCACCTCCGGAGTACGACACATGCCTAGGGGACTTGTACAGCGTT GCTTGGATGGAAGACAGCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTAC AATCTCGTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTGATG GAATACGGTTCTTTAGAGCTGAATGCCCATCATGTGTTCATGTACATGGGTTCCAATCCG GCTAACGACAATGCTACATTTGTGGAAGATAACTCGTTGCCATCGTTCTCAAGGGCTGTT AATCAGCGGGATGCTGACCTGGTTTACTTCTGGCAGAAGTACCGCAAATTGCCTGAGAGT TCTCCTGAGAAAAACGAAGCTCGGAAGCAATTGCTTGAAATGATGGCACACAGATCTCAT GTTGACAACAGTGTTGAGCTGATCGGAAACCTTCTCTTTGGCTCTGAGGAAGGCCCAAGG GTTCTAAAGGCTGTTCGTGCAACTGGCGAACCTCTTGTTGATGACTGGAGTTGTCTCAAG TCTATGGTACGCACTTTCGAAGCACAATGCGGCTCGCTAGCGCAGTATGGAATGAAGCAT ATGCGTTCCTTTGCAAACATCTGCAATGCTGGCATCTCTGCTGAAGCGATGGCAAAGGTT GCTGCGCAGGCTTGCACCAGCATTCCCTCCAACCCCTGGAGTTCCACCCATAGGGGTTTT AGTGCTTAA

Peptide Sequence

PEP ID	Os01t0559600-02
PEP Infomation	pep chromosome:IRGSP-1.0:1:21232521:21234906:1 gene:Os01g0559600 transcript:Os01t0559600-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:vacuolar processing enzyme 2, legumain 1 description:Similar to C13 endopeptidase NP1 precursor. (Os01t0559600-01);Similar to Asparaginyl endopeptidase. (Os01t0559600-02)
Sequence	FYLEACESGSIFEGLLPNGINVYATTASNADESSWGTYCPGEYPSPPPEYDTCLGDLYSV AWMEDSDVHNLRTESLKQQYNLVKERTSVQHTYYSGSHVMEYGSLELNAHHVFMYMGSNP ANDNATFVEDNSLPSFSRAVNQRDADLVYFWQKYRKLPESSPEKNEARKQLLEMMAHRSH VDNSVELIGNLLFGSEEGPRVLKAVRATGEPLVDDWSCLKSMVRTFEAQCGSLAQYGMKH MRSFANICNAGISAEAMAKVAAQACTSIPSNPWSSTHRGFSA

Transcript Sequence

Transcript ID	Os01t0559600-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:21232521:21234906:1 gene:Os01g0559600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:vacuolar processing enzyme 2, legumain 1 description:Similar to C13 endopeptidase NP1 precursor. (Os01t0559600-01);Similar to Asparaginyl endopeptidase. (Os01t0559600-02)
Sequence	CTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTGCCAAATGGCAT CAATGTTTATGCCACCACTGCATCAAACGCTGATGAGAGCAGCTGGGGAACATACTGCCC TGGGGAGTACCCGAGCCCACCTCCGGAGTACGACACATGCCTAGGGGACTTGTACAGCGT TGCTTGGATGGAAGACAGCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTA CAATCTCGTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTGAT GGAATACGGTTCTTTAGAGCTGAATGCCCATCATGTGTTCATGTACATGGGTTCCAATCC GGCTAACGACAATGCTACATTTGTGGAAGATAACTCGTTGCCATCGTTCTCAAGGGCTGT TAATCAGCGGGATGCTGACCTGGTTTACTTCTGGCAGAAGTACCGCAAATTGCCTGAGAG TTCTCCTGAGAAAAACGAAGCTCGGAAGCAATTGCTTGAAATGATGGCACACAGATCTCA TGTTGACAACAGTGTTGAGCTGATCGGAAACCTTCTCTTTGGCTCTGAGGAAGGCCCAAG GGTTCTAAAGGCTGTTCGTGCAACTGGCGAACCTCTTGTTGATGACTGGAGTTGTCTCAA GTCTATGGTACGCACTTTCGAAGCACAATGCGGCTCGCTAGCGCAGTATGGAATGAAGCA TATGCGTTCCTTTGCAAACATCTGCAATGCTGGCATCTCTGCTGAAGCGATGGCAAAGGT TGCTGCGCAGGCTTGCACCAGCATTCCCTCCAACCCCTGGAGTTCCACCCATAGGGGTTT TAGTGCTTAAATCATAGGTGAAGAAAACTTAGCAAATATTCTCAGCTCCTGCAATATACC CAAGTTATCTTTTTCTCTTGCCCCTGTAGTTTGATGATCGATTGGGGGCAGTAGTGCTTG AACCGTAGGTGAAGTCTGAAGAACTGTGCATTATTTCAGATGCTCCACCATCCCAAATCA TCTAAATTGTTCTCGTTCTCTGGTGTACATACCATAGCAGGAAAATTGATATGGCAATAT TACCTGCCATCATTGCTGTACATACTTATAGCTTGCTATATGTAGTTTGTAGCTACATAT ATAATATGATAAATGCATTGCTGCTATTTT