Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0559500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:21195400:21201154:1 gene:Os01g0559500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os01t0559500-01)
Sequence

ATGGAGGCCGCCGCGTCGCTGCCGCTCCCCGCCTCCCGCTTCCTCTCCCCTCCTCCTCAT
CCAACGCCAGCGGCGGCGGCGGCGGCGGCGTGCTGCTCCCGACGGAACATCTCCTGCGCC
CGCGCCGCCCCCCGGGCGCTGGAAGCCCCGCAGGCCTCGAGGCCGCCACCGCGGCCGTCG
CCTCGGCGCAGCGCCGTCGCGGAGGTCAAGGCCGCCCCCGACCCCGTCGCCGCACTCACC
AGGTTCGAGGATGTGCTGCAGACACAGGACTGCAACATAATCCTGCGCCACTACGGTGAA
ACCAGGCGCTGGGATGAGCTATCTAAGGTCTTCGGGTGGATGCAGGAGCACGACATGCTC
AACATTGCGTCTTACAGCAGTTACTTCAAGTACCTTGGGTTGAGCCGCAACCCTGCCCGA
GCGCTGCAAGTGTACGGTGCTATCCGAGAAAACCCGACAAGGATCCATGTCTCCGTTTGT
AACTCGGTCCTCGGGTGCTTGGTGAAGAACGGGAGGTTCGATAGCAGCTTCAAGCTTTAT
GATGAGATGATACGAGAAGGTCTATCACCCGATCTGTTCACCTACAGTACCCTTCTGTCA
GGGTGCATGAAGTTGAAGCAGGGTTACACTAAGGCCATGGAATTAGTTAATGAGCTGAAT
TCCCGTGGTTTTCAGATGGATAGTGTAATATATGGCACTCTCCTGGCTATATGCGCGTCA
CATAACTGCTGCGAGAAGGCTGAGGAATATTTTCAGAAAATGAAGGACGAAGGACACAAG
CCTAATCTATTCCATTATAGCTCTCTGTTGAATGCATATTCAGAAAATGCTAATTATGAA
AAGGCTGATCTGTTGATGAAAGATTTGAGGTCCTCAGGGTTAACACCGAACAAGGTTATA
CTCACCACTTTGTTAAAGGTGTATTCTAAAGGTGGTCTCTTTGAGAAGGCAAGGGAACTG
CTAACTGAACTGGAAGCTTCAGGCTTCGCACAGGATGAGATGCCTTACTGCATATTGATT
GATGGCCTTGTCAAAGAACGGAAGATATGGGAAGCCATGATTCTATTTAATGATATGAAA
GAAAAAGGTGTCAAATCTGATGGCTATGCATTCAGTATCATGATATCAGCATTACATCGA
GGTGGCTATCGTGAAGAGTCAAAACAACTTGCAAAAGAATTTGAGGCCAAGAATGCAACA
TATGATCTGGTTATGCTTAATACATCACTTCGTGCTTACTGCAGCACCAATGATATGGAA
AGTGTAATGATCATGCTTAGGAAAATGGATGAATCGAACATATCGCCTGATGCTATCACA
TTTAATACCTTAATAAGGTACTTCTGCATGGCAAAGGTCTATCACCTAGCATACAAGACA
ATTCAAGATATGCATACAAAGGGCCATCAATTGAATGAGGAGCTTTGTTCTGAGATAATG
ATGCAGCTAGGAGAAGCGGGTTTTCCTTCTGAAGCATTTTCTGTGTATAATATGTTGAGA
TATGGAAAGAGAACAGTGTGTAAATCTCTTCATGAGAAGGTTTTATGTATCTTAGTTCCA
GCTGGACTTCTCAAGGATGCATACGTAGTTGTTAAGGACAATTCCGAGTTCATATCTCGA
CGCTCGCTGGGGAATTTTGCTAGATCTTTCATGGCATCAGGCAACATAAATTTGATTAAC
GATGTTATGAAAGCAGTACACCGTTCAGGATGGCGTATTAGCCAGGATATCTTTGGGAAA
GCAATTCAGCGATACATTCAGAAACCTGATAAGAAGCAGCTACTGCTTTGCCTCTTGGAC
TGGATGACTGGTCAAGGCTATTCTGTGGACTCATCATCAAGGAACTTGCTTTTGAGAAAT
GCCCAACTCTTTGGCCAAAAGCAACTTATAGCTGAAATCCTTTCCAAGCAGCAGGGAGCA
TCAAGGATCACAAGTCAAAGGCACCAAAAATAG

Peptide Sequence

PEP ID

Os01t0559500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:21195400:21201154:1 gene:Os01g0559500 transcript:Os01t0559500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os01t0559500-01)
Sequence

MEAAASLPLPASRFLSPPPHPTPAAAAAAACCSRRNISCARAAPRALEAPQASRPPPRPS
PRRSAVAEVKAAPDPVAALTRFEDVLQTQDCNIILRHYGETRRWDELSKVFGWMQEHDML
NIASYSSYFKYLGLSRNPARALQVYGAIRENPTRIHVSVCNSVLGCLVKNGRFDSSFKLY
DEMIREGLSPDLFTYSTLLSGCMKLKQGYTKAMELVNELNSRGFQMDSVIYGTLLAICAS
HNCCEKAEEYFQKMKDEGHKPNLFHYSSLLNAYSENANYEKADLLMKDLRSSGLTPNKVI
LTTLLKVYSKGGLFEKARELLTELEASGFAQDEMPYCILIDGLVKERKIWEAMILFNDMK
EKGVKSDGYAFSIMISALHRGGYREESKQLAKEFEAKNATYDLVMLNTSLRAYCSTNDME
SVMIMLRKMDESNISPDAITFNTLIRYFCMAKVYHLAYKTIQDMHTKGHQLNEELCSEIM
MQLGEAGFPSEAFSVYNMLRYGKRTVCKSLHEKVLCILVPAGLLKDAYVVVKDNSEFISR
RSLGNFARSFMASGNINLINDVMKAVHRSGWRISQDIFGKAIQRYIQKPDKKQLLLCLLD
WMTGQGYSVDSSSRNLLLRNAQLFGQKQLIAEILSKQQGASRITSQRHQK

Transcript Sequence

Transcript ID

Os01t0559500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:21195400:21201154:1 gene:Os01g0559500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os01t0559500-01)
Sequence

CGCGAACACAGCAGCGCCCCGCCGGCGGCGAGATGGAGGCCGCCGCGTCGCTGCCGCTCC
CCGCCTCCCGCTTCCTCTCCCCTCCTCCTCATCCAACGCCAGCGGCGGCGGCGGCGGCGG
CGTGCTGCTCCCGACGGAACATCTCCTGCGCCCGCGCCGCCCCCCGGGCGCTGGAAGCCC
CGCAGGCCTCGAGGCCGCCACCGCGGCCGTCGCCTCGGCGCAGCGCCGTCGCGGAGGTCA
AGGCCGCCCCCGACCCCGTCGCCGCACTCACCAGGTTCGAGGATGTGCTGCAGACACAGG
ACTGCAACATAATCCTGCGCCACTACGGTGAAACCAGGCGCTGGGATGAGCTATCTAAGG
TCTTCGGGTGGATGCAGGAGCACGACATGCTCAACATTGCGTCTTACAGCAGTTACTTCA
AGTACCTTGGGTTGAGCCGCAACCCTGCCCGAGCGCTGCAAGTGTACGGTGCTATCCGAG
AAAACCCGACAAGGATCCATGTCTCCGTTTGTAACTCGGTCCTCGGGTGCTTGGTGAAGA
ACGGGAGGTTCGATAGCAGCTTCAAGCTTTATGATGAGATGATACGAGAAGGTCTATCAC
CCGATCTGTTCACCTACAGTACCCTTCTGTCAGGGTGCATGAAGTTGAAGCAGGGTTACA
CTAAGGCCATGGAATTAGTTAATGAGCTGAATTCCCGTGGTTTTCAGATGGATAGTGTAA
TATATGGCACTCTCCTGGCTATATGCGCGTCACATAACTGCTGCGAGAAGGCTGAGGAAT
ATTTTCAGAAAATGAAGGACGAAGGACACAAGCCTAATCTATTCCATTATAGCTCTCTGT
TGAATGCATATTCAGAAAATGCTAATTATGAAAAGGCTGATCTGTTGATGAAAGATTTGA
GGTCCTCAGGGTTAACACCGAACAAGGTTATACTCACCACTTTGTTAAAGGTGTATTCTA
AAGGTGGTCTCTTTGAGAAGGCAAGGGAACTGCTAACTGAACTGGAAGCTTCAGGCTTCG
CACAGGATGAGATGCCTTACTGCATATTGATTGATGGCCTTGTCAAAGAACGGAAGATAT
GGGAAGCCATGATTCTATTTAATGATATGAAAGAAAAAGGTGTCAAATCTGATGGCTATG
CATTCAGTATCATGATATCAGCATTACATCGAGGTGGCTATCGTGAAGAGTCAAAACAAC
TTGCAAAAGAATTTGAGGCCAAGAATGCAACATATGATCTGGTTATGCTTAATACATCAC
TTCGTGCTTACTGCAGCACCAATGATATGGAAAGTGTAATGATCATGCTTAGGAAAATGG
ATGAATCGAACATATCGCCTGATGCTATCACATTTAATACCTTAATAAGGTACTTCTGCA
TGGCAAAGGTCTATCACCTAGCATACAAGACAATTCAAGATATGCATACAAAGGGCCATC
AATTGAATGAGGAGCTTTGTTCTGAGATAATGATGCAGCTAGGAGAAGCGGGTTTTCCTT
CTGAAGCATTTTCTGTGTATAATATGTTGAGATATGGAAAGAGAACAGTGTGTAAATCTC
TTCATGAGAAGGTTTTATGTATCTTAGTTCCAGCTGGACTTCTCAAGGATGCATACGTAG
TTGTTAAGGACAATTCCGAGTTCATATCTCGACGCTCGCTGGGGAATTTTGCTAGATCTT
TCATGGCATCAGGCAACATAAATTTGATTAACGATGTTATGAAAGCAGTACACCGTTCAG
GATGGCGTATTAGCCAGGATATCTTTGGGAAAGCAATTCAGCGATACATTCAGAAACCTG
ATAAGAAGCAGCTACTGCTTTGCCTCTTGGACTGGATGACTGGTCAAGGCTATTCTGTGG
ACTCATCATCAAGGAACTTGCTTTTGAGAAATGCCCAACTCTTTGGCCAAAAGCAACTTA
TAGCTGAAATCCTTTCCAAGCAGCAGGGAGCATCAAGGATCACAAGTCAAAGGCACCAAA
AATAGTTGATAAGGTAGAATTCAATATATGTAAATTGTTCAGATTCATCCAAGAATATTC
TTTAGTAAACCATTGTTGATGATCAGTGTTAACATGTTCGTAGGGATCGGTTAGATCATC
AGGTAACAAGTTATTCACCCTCATCCTCATGTGTCCCAGGATCCAATCAAGATTCATCAG
AATTACAGATC