Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0559000-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:21167873:21172622:1 gene:Os01g0559000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1000 family protein. (Os01t0559000-01);Similar to Thioredoxin family Trp26. (Os01t0559000-02)
Sequence	ATGGCGTGCCTGCACGACCACAGCTGCGAGGATCACAACTGCGCCGCCGACTGGTCGCTC TTCAACCACATCGACGTCCCCAAGGTGGTGGCTCTGAACGAATCTGTGGCGGGGAGCGTC AAGTCGGTCTTCAAGCCCTGGGAGCAGCGCCTCGACACCTCTGGGGGTTTTCTGGAGAGT AATGAGGGTGACCCTGAGTTACTTGTTTTCATCCCGTTTACATCAGACGTCAAGATCAAG AGCATCTCTGTTGTTGGTGGTGCAGATGGAACAAGCCCTTCTAGAATGAGAGCGTTTATC AACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACCTGTGCAGGAATGGGAG CTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAGGTATTCAAGGTTCCAGGGT GTGGCTAACCTAACTCTACATTTCCCTGAGAACTTTGGAGGTGACACAACTAAGATATAT TACATTGGGTTGCGTGGTGAAGCTACTCAGAACAAAAGGGATGTTGTGGCCACAATTGTG TATGAAATAATGCCTAATCCATCTGATCACAAAACTAAGTCTGAGACTGGAGGTGGTTTC TCGCATGTTGAGTAG

Peptide Sequence

PEP ID	Os01t0559000-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:21167873:21172622:1 gene:Os01g0559000 transcript:Os01t0559000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1000 family protein. (Os01t0559000-01);Similar to Thioredoxin family Trp26. (Os01t0559000-02)
Sequence	MACLHDHSCEDHNCAADWSLFNHIDVPKVVALNESVAGSVKSVFKPWEQRLDTSGGFLES NEGDPELLVFIPFTSDVKIKSISVVGGADGTSPSRMRAFINREGIDFNDAQNMQPVQEWE LAENLQGVLEYQTRYSRFQGVANLTLHFPENFGGDTTKIYYIGLRGEATQNKRDVVATIV YEIMPNPSDHKTKSETGGGFSHVE

Transcript Sequence

Transcript ID	Os01t0559000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:21167873:21172622:1 gene:Os01g0559000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1000 family protein. (Os01t0559000-01);Similar to Thioredoxin family Trp26. (Os01t0559000-02)
Sequence	AACAGGCCGCTGCTATATATCCGCCTCCTGCTAATCCGCGACTAGGGAGTGAAGAGCGAA TCAAACACCACCACCATCGCCAGCGTCATTCAGATTTCAGAGGGAGGGAGGGAGGGAGAG AGAAAGGAAGGGGAAGTGGGGGAGAAGGAGGGGAGAGGATGGCGTGCCTGCACGACCACA GCTGCGAGGATCACAACTGCGCCGCCGACTGGTCGCTCTTCAACCACATCGACGTCCCCA AGGTGGTGGCTCTGAACGAATCTGTGGCGGGGAGCGTCAAGTCGGTCTTCAAGCCCTGGG AGCAGCGCCTCGACACCTCTGGGGGTTTTCTGGAGAGTAATGAGGGTGACCCTGAGTTAC TTGTTTTCATCCCGTTTACATCAGACGTCAAGATCAAGAGCATCTCTGTTGTTGGTGGTG CAGATGGAACAAGCCCTTCTAGAATGAGAGCGTTTATCAACCGAGAAGGCATTGACTTCA ATGATGCTCAAAATATGCAACCTGTGCAGGAATGGGAGCTGGCAGAGAATTTGCAGGGAG TTCTTGAGTACCAAACAAGGTATTCAAGGTTCCAGGGTGTGGCTAACCTAACTCTACATT TCCCTGAGAACTTTGGAGGTGACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAG CTACTCAGAACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCAT CTGATCACAAAACTAAGTCTGAGACTGGAGGTGGTTTCTCGCATGTTGAGTAGGCATGTC AGAGCATGGAAAGCAGATCGGTGTTGGATGCTGCTATCAGCTGTGATGACCTTCAGCTCT ACTAATAAAACAATCCAGCTCTTGGAGACCAGTAGTAGCTTGACTTCTGAGTGCAGAACT CGTGTACCTGTCGATACTGACTACATCGTCAAAAGTTGATGGCTTGTGCAATTTTACCGT AGTCTTAACTGTCTGTACTTCATGTCCATATTGCGTTCAGTTCAATGGTAATGTGATACT TGCTAATTTTGTTC