Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0551100-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:20665550:20671003:-1 gene:Os01g0551100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribonuclease III domain containing protein. (Os01t0551100-01)
Sequence

ATGCAGCAGCAGCAGCATCCGGCGCCGGGCGCGGAGTTCGTGGCGGACCGGGACGCGGCG
CGGGCGGAGGTGGAGCGTGCACTGGGCGGGTACAGCTTCCGCGACGGCGGCGCGCTGCTG
CTGGAGGACGCCCTGACGCACAGCGTGCACCCCAGGGACGAGGCCGGCGGGCGGGCCAGG
CACCAGCGGCTCGAGTTCCTCGGCGACGCTGCGCTCGGCCTCGCCTTCGCCACCATCTTC
TACCGGGACGACCCGGGCCTCGACCAGGGGGACCTCACGGTGCTCCGCTCCGCCAACGTC
TCCACCCAGAAGCTCGCCCGCGTCGCCGTCCGCCGGCGCCTCTATCCGCTGCTCCGGCGC
TACAACTGCGCCCCTCAAGACCACGAAGTCAGCCGTTTTACCAAGTCAGTTGAAGGCCCA
TATAGTGGTGACCCCATTGAGGGTCCAAGGGTGCTTGCTGATATTGTTGAGGCCATTGTT
GGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAGTACTCCAGAAGGTTGCGAAGTTG
CTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAGAAGATCCTGAGTCCATGTTGAAT
GAGCTAGGGGGAGAACATAGGGAAGATTTGGAAATCAAAATATTGGCGTGGAGGAAGGTG
GCAAACGTAGTCGATGATGGCCGGGAGCAAGCGATCACAACTAGTGGACTTGGCAACGGC
TCAGAGGATGAGGTTGGAAAGCTTAGAACAATAAGAATAGAAGAAGCTTAA

Peptide Sequence

PEP ID

Os01t0551100-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:20665550:20671003:-1 gene:Os01g0551100 transcript:Os01t0551100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribonuclease III domain containing protein. (Os01t0551100-01)
Sequence

MQQQQHPAPGAEFVADRDAARAEVERALGGYSFRDGGALLLEDALTHSVHPRDEAGGRAR
HQRLEFLGDAALGLAFATIFYRDDPGLDQGDLTVLRSANVSTQKLARVAVRRRLYPLLRR
YNCAPQDHEVSRFTKSVEGPYSGDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKL
LCEPIITKKALLEDPESMLNELGGEHREDLEIKILAWRKVANVVDDGREQAITTSGLGNG
SEDEVGKLRTIRIEEA

Transcript Sequence

Transcript ID

Os01t0551100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:20665550:20671003:-1 gene:Os01g0551100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribonuclease III domain containing protein. (Os01t0551100-01)
Sequence

GGTCGAAAGCTCTAACTCTAGCTTTGATCCATGCATATCTATCCATCCTTTCTTTGATCG
GTCGCAACGCCCAGAAACTGATCGACGATGCAGCAGCAGCAGCATCCGGCGCCGGGCGCG
GAGTTCGTGGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGCGTGCACTGGGCGGGTAC
AGCTTCCGCGACGGCGGCGCGCTGCTGCTGGAGGACGCCCTGACGCACAGCGTGCACCCC
AGGGACGAGGCCGGCGGGCGGGCCAGGCACCAGCGGCTCGAGTTCCTCGGCGACGCTGCG
CTCGGCCTCGCCTTCGCCACCATCTTCTACCGGGACGACCCGGGCCTCGACCAGGGGGAC
CTCACGGTGCTCCGCTCCGCCAACGTCTCCACCCAGAAGCTCGCCCGCGTCGCCGTCCGC
CGGCGCCTCTATCCGCTGCTCCGGCGCTACAACTGCGCCCCTCAAGACCACGAAGTCAGC
CGTTTTACCAAGTCAGTTGAAGGCCCATATAGTGGTGACCCCATTGAGGGTCCAAGGGTG
CTTGCTGATATTGTTGAGGCCATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTT
GAAGTACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTA
CTAGAAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAGAACATAGGGAAGATTTGGAA
ATCAAAATATTGGCGTGGAGGAAGGTGGCAAACGTAGTCGATGATGGCCGGGAGCAAGCG
ATCACAACTAGTGGACTTGGCAACGGCTCAGAGGATGAGGTTGGAAAGCTTAGAACAATA
AGAATAGAAGAAGCTTAACGAGCAGCACAGCAAGTTACAGTAAATTGGCGACCAGGAACC
AATCAGTGAACTAGCAGCCCATATATAGTGGCTGGATCTGAACTTTTGTGGGTCAGGTAT
GGAACATATTCATGTATTGCGCAGGCACTTCTATGCTATGCTAGCTCTGAACATTGATGC
CTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTA
TGGCTATTGAAATTGATGCAGACCTGGTACTATTGATGTCTGGTACCCTGGTTATCAGGC
CAAGCGTGTCCTAATCTTGTCGAGCGATGAACACTATAGTGTATTTTGTCTTATGTACAA
TGGAGGTTTGTCATACTGAATCTGTGTTTGTACTCAACCAATGTATATGTAGAATACCAT
GTAAAGTAATATTATTAAAGAATGTGTGATGTTTGTTC