Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0550800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:20640981:20643879:1 gene:Os01g0550800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF239, plant domain containing protein. (Os01t0550800-01)
Sequence

ATGGCAGCAGCAAGGGCGTGCTTGGTGGTGGCGCTCCTCCTCCTGGTGGCTCTCTTCTCG
CCATCGGAAGCTACTTCGTCTACTTCTTTGCGGCGGCGGCAGGTGCGGAGCCTCCTCAAG
CGCCTCAACAAGCCTCCCCTCGCAACCTTTCAGAGCCTAGATGGAGATATCATAGATTGT
GTGCACATCTCCAATCAACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAG
ATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCATTCACCCAA
ACATGGAATCAGAATGGCGAAAAGTGCCCTGACAATACTATACCGATCCGAAGGACCAAG
GAGGAGGATGTCATGAGGGCCACCTCTGTTACAACGTTTGGCAAGAAGACGCACGGCGGG
AGCCCTCACCCTCACTCTCACTTGGGTGGTGTCACGGACGGCCACCACTATGGTGTAGCA
TATGCGACTGGGGATTCCAACTACTACGGAACCAAAGTGACCATCAATGTGTGGCAACCA
ACGATTGCAACATTCGGTGATTTCAGCTTGTCCCAGCTATGGATCACAGCGGGCTCCTAT
GAAAACAAGGACCTTAATACCATTGAAGCAGGATGGCAGGTGTACCCAGCTATGTACGGG
GATGATAAAACTAGACTCTTCATCTATTGGACTCGTGATGCATATAACACAACGGGATGT
TACAATCTAGCGTGCTCAGGGTTCATCCAGACAAACCCGCAGTTCGTCATCGGTGGCAGC
TTATCCCCTGTCTCCATCTATGGCAGCACACAATATGAGTATGATTATTTAGTTTGGAAG
GACCCAGCGGGGGGCAACTGGTGGTTGCAACTGCAAGGCAATTATGTGGGCTACTGGCCA
TCATCCATCTTTACCCTCCTGCAGACAGGCGTTGCCGATACTGTGGAATGGGGTGGGGAG
GTGTATTCTCCTCAAATTACCGCACCCATGGGCAGTGGACATTTCCCTGAGGAAGGGTTT
GGCAAGGCCACCTACAGTAGAGCAATCCAAGTTGTTGATTCCTCCAACCATCTCAAACCA
CCAAATGGTGTGGGCTTGATAGCCTCGCTGCCCAATTGCTATAATATCATGACTGGTTCC
TCCAGTACCACTAGTTGGGGCACTTACATTTACTATGGTGGACCTGGGTGCCCTCAAAAC
TCCCAAATTGAAGTGATGTAG

Peptide Sequence

PEP ID

Os01t0550800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:20640981:20643879:1 gene:Os01g0550800 transcript:Os01t0550800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF239, plant domain containing protein. (Os01t0550800-01)
Sequence

MAAARACLVVALLLLVALFSPSEATSSTSLRRRQVRSLLKRLNKPPLATFQSLDGDIIDC
VHISNQPAFDHPLLKDHTIQMRPSIQPSGLYGEATRPFTQTWNQNGEKCPDNTIPIRRTK
EEDVMRATSVTTFGKKTHGGSPHPHSHLGGVTDGHHYGVAYATGDSNYYGTKVTINVWQP
TIATFGDFSLSQLWITAGSYENKDLNTIEAGWQVYPAMYGDDKTRLFIYWTRDAYNTTGC
YNLACSGFIQTNPQFVIGGSLSPVSIYGSTQYEYDYLVWKDPAGGNWWLQLQGNYVGYWP
SSIFTLLQTGVADTVEWGGEVYSPQITAPMGSGHFPEEGFGKATYSRAIQVVDSSNHLKP
PNGVGLIASLPNCYNIMTGSSSTTSWGTYIYYGGPGCPQNSQIEVM

Transcript Sequence

Transcript ID

Os01t0550800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:20640981:20643879:1 gene:Os01g0550800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF239, plant domain containing protein. (Os01t0550800-01)
Sequence

AAGCACTGCAGCGAGCCGAAGAAGCTTAGCTTTAAGCAGCAGCTAGCAATGGCAGCAGCA
AGGGCGTGCTTGGTGGTGGCGCTCCTCCTCCTGGTGGCTCTCTTCTCGCCATCGGAAGCT
ACTTCGTCTACTTCTTTGCGGCGGCGGCAGGTGCGGAGCCTCCTCAAGCGCCTCAACAAG
CCTCCCCTCGCAACCTTTCAGAGCCTAGATGGAGATATCATAGATTGTGTGCACATCTCC
AATCAACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAGATGCGACCTTCT
ATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCATTCACCCAAACATGGAATCAG
AATGGCGAAAAGTGCCCTGACAATACTATACCGATCCGAAGGACCAAGGAGGAGGATGTC
ATGAGGGCCACCTCTGTTACAACGTTTGGCAAGAAGACGCACGGCGGGAGCCCTCACCCT
CACTCTCACTTGGGTGGTGTCACGGACGGCCACCACTATGGTGTAGCATATGCGACTGGG
GATTCCAACTACTACGGAACCAAAGTGACCATCAATGTGTGGCAACCAACGATTGCAACA
TTCGGTGATTTCAGCTTGTCCCAGCTATGGATCACAGCGGGCTCCTATGAAAACAAGGAC
CTTAATACCATTGAAGCAGGATGGCAGGTGTACCCAGCTATGTACGGGGATGATAAAACT
AGACTCTTCATCTATTGGACTCGTGATGCATATAACACAACGGGATGTTACAATCTAGCG
TGCTCAGGGTTCATCCAGACAAACCCGCAGTTCGTCATCGGTGGCAGCTTATCCCCTGTC
TCCATCTATGGCAGCACACAATATGAGTATGATTATTTAGTTTGGAAGGACCCAGCGGGG
GGCAACTGGTGGTTGCAACTGCAAGGCAATTATGTGGGCTACTGGCCATCATCCATCTTT
ACCCTCCTGCAGACAGGCGTTGCCGATACTGTGGAATGGGGTGGGGAGGTGTATTCTCCT
CAAATTACCGCACCCATGGGCAGTGGACATTTCCCTGAGGAAGGGTTTGGCAAGGCCACC
TACAGTAGAGCAATCCAAGTTGTTGATTCCTCCAACCATCTCAAACCACCAAATGGTGTG
GGCTTGATAGCCTCGCTGCCCAATTGCTATAATATCATGACTGGTTCCTCCAGTACCACT
AGTTGGGGCACTTACATTTACTATGGTGGACCTGGGTGCCCTCAAAACTCCCAAATTGAA
GTGATGTAGAGAGAGATCGAGCTCACGATCAAACTACGTACATCACATTAATAATTTACA
TGTAGTACTACACGATCAACATCGCTCGCTCGCCCAATAATATAGTATTGTTGGATAGGG
TCTATACTAGCTAATATTACATGCCGCATGTCAAGCTCTGATTGCTAGTACGTATGTATA
TGTATACATTTGCATGTATTGGTAAGAGGTTTGAACCAAGCTAGCATTACAAGCTGGCAA
TAAATGTATTGTCACAGTTTACTGGAAGTTATGTTATGGAATATACTTATTT