Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0550000-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:20571063:20576206:1 gene:Os01g0550000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:API5-INTERACTING PROTEIN 2 description:DEAD-like helicase, N-terminal domain containing protein. (Os01t0550000-01);Similar to spliceosome RNA helicase BAT1. (Os01t0550000-02)
Sequence	ATGGGCGAAGCTGAGGTCAAGGACAACGAGGTGTACGAGGAGGATCTCGTCGACTACGAG GAGGAGGTCGAGAACGGCGCCGACGGCGGCGCCGCCGCCGCCAACGCCTCCGCCGACGTC GTCAAGAAGGGGTACGTGGGGATCCACAGCTCGGGGTTCAGAGACTTCCTGCTCAAGCCG GAGCTGCTTCGCGCCATCCAGGACTGCGGGTTTGAGCACCCTTCCGAAGTGCAACACGAA TGCATCCCACAAGCCATTCTTGGAATGGATGTCATCTGCCAAGCAAAATCTGGGATGGGG AAGACTGCTGTTTTTGTTCTCTCAAGTCTTCAGCAAATTGATCCTGTTGCTGGTCAAGTT GGTGCACTTGTGCTATGTCACACAAGGGAGCTAGCTTACCAGATTTGCCATGAATTTGAG AGGTTTAGCAAGTACCTTCCTGAGGTAAAAGTTGCTGTCTTCTATGGTGGCGTTCACATA AAAAAACACAAGGATCTGTTGAAGAATGACTGCCCTCATATTGTGGTTGGAACACCTGGA AGGATACTTGCTCTAGCTAGAGAAAAGGATCTTTCCTTGAAGAATGTGAGGCATTTCATT CTTGATGAATGTGACAAGATGCTCGATTCGCTTGATATGCGTAGAGATGTGCAGGAGATC TTCAAAATGACACCCCATGATAAGCAAGTGATGATGTTTTCAGCGACCCTTAGCAAGGAG ATCCGCCCAGTTTGCAAGAAATTCATGCAAGATCCTATGGAAATTTATGTTGATGATGAG GCTAAACTGACCCTTCACGGGCTTGTTCAGCACTATATAAAACTAAGTGAGGCGGAGAAG AACCGGAAATTGAATGATCTCTTAGATGCACTTGACTTCAATCAAGTTGTGATATTTGTT AAAAGTGTTAGTAGAGCTGCAGAACTGAACAAGCTGCTTTGTGAATGCAACTTTCCTGCG ATCTCCATACATTCTGGAATGACACAGGAGGAGAGGCTGACCCGGTACAAGAACTTCAAG GAAGGACACAAGAGGATTCTTGTGGCTACTGATTTAGTTGGCAGGGGAATTGATATTGAA CGTGTCAACATTGTCATAAACTATGACATGCCCGATTCTGCTGACTCGTATTTGCACAGG GTTGGAAGGGCTGGACGTTTTGGAACCAAAGGACTTGCAATAACATTTGTTTCCTCTGCC TCAGACTCTGATGTTCTTAATCAAGTGCAAGAAAGATTCGAGGTTGACATAAAGGAGCTT CCTGAGCAGATTGATACTTCGACATATATGCCTTCGTAA

Peptide Sequence

PEP ID	Os01t0550000-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:20571063:20576206:1 gene:Os01g0550000 transcript:Os01t0550000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:API5-INTERACTING PROTEIN 2 description:DEAD-like helicase, N-terminal domain containing protein. (Os01t0550000-01);Similar to spliceosome RNA helicase BAT1. (Os01t0550000-02)
Sequence	MGEAEVKDNEVYEEDLVDYEEEVENGADGGAAAANASADVVKKGYVGIHSSGFRDFLLKP ELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQV GALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPG RILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATLSKE IRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFV KSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIE RVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKEL PEQIDTSTYMPS

Transcript Sequence

Transcript ID	Os01t0550000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:20571063:20576206:1 gene:Os01g0550000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:API5-INTERACTING PROTEIN 2 description:DEAD-like helicase, N-terminal domain containing protein. (Os01t0550000-01);Similar to spliceosome RNA helicase BAT1. (Os01t0550000-02)
Sequence	CTCTCTCTCTTTGCAGCCGCCGCCGCCGCCGCCGCGTCCGCTTCGAGTCCCGCCTCCAGC TTCTCTCCCCGCAGCGCGCAGGCACCATGGGCGAAGCTGAGGTCAAGGACAACGAGGTGT ACGAGGAGGATCTCGTCGACTACGAGGAGGAGGTCGAGAACGGCGCCGACGGCGGCGCCG CCGCCGCCAACGCCTCCGCCGACGTCGTCAAGAAGGGGTACGTGGGGATCCACAGCTCGG GGTTCAGAGACTTCCTGCTCAAGCCGGAGCTGCTTCGCGCCATCCAGGACTGCGGGTTTG AGCACCCTTCCGAAGTGCAACACGAATGCATCCCACAAGCCATTCTTGGAATGGATGTCA TCTGCCAAGCAAAATCTGGGATGGGGAAGACTGCTGTTTTTGTTCTCTCAAGTCTTCAGC AAATTGATCCTGTTGCTGGTCAAGTTGGTGCACTTGTGCTATGTCACACAAGGGAGCTAG CTTACCAGATTTGCCATGAATTTGAGAGGTTTAGCAAGTACCTTCCTGAGGTAAAAGTTG CTGTCTTCTATGGTGGCGTTCACATAAAAAAACACAAGGATCTGTTGAAGAATGACTGCC CTCATATTGTGGTTGGAACACCTGGAAGGATACTTGCTCTAGCTAGAGAAAAGGATCTTT CCTTGAAGAATGTGAGGCATTTCATTCTTGATGAATGTGACAAGATGCTCGATTCGCTTG ATATGCGTAGAGATGTGCAGGAGATCTTCAAAATGACACCCCATGATAAGCAAGTGATGA TGTTTTCAGCGACCCTTAGCAAGGAGATCCGCCCAGTTTGCAAGAAATTCATGCAAGATC CTATGGAAATTTATGTTGATGATGAGGCTAAACTGACCCTTCACGGGCTTGTTCAGCACT ATATAAAACTAAGTGAGGCGGAGAAGAACCGGAAATTGAATGATCTCTTAGATGCACTTG ACTTCAATCAAGTTGTGATATTTGTTAAAAGTGTTAGTAGAGCTGCAGAACTGAACAAGC TGCTTTGTGAATGCAACTTTCCTGCGATCTCCATACATTCTGGAATGACACAGGAGGAGA GGCTGACCCGGTACAAGAACTTCAAGGAAGGACACAAGAGGATTCTTGTGGCTACTGATT TAGTTGGCAGGGGAATTGATATTGAACGTGTCAACATTGTCATAAACTATGACATGCCCG ATTCTGCTGACTCGTATTTGCACAGGGTTGGAAGGGCTGGACGTTTTGGAACCAAAGGAC TTGCAATAACATTTGTTTCCTCTGCCTCAGACTCTGATGTTCTTAATCAAGTGCAAGAAA GATTCGAGGTTGACATAAAGGAGCTTCCTGAGCAGATTGATACTTCGACATATATGCCTT CGTAAAGATCCGGGTGGACTGCTTAAAAGCTTACATTCGAACCGGAAACAGGAGTATCTC CTTGAGATACGCCATATTAAGAATCTATCGGATAACTAGAAACTTAGTGTGAGAAATGCT GCCCTCACTTAGACAGCAGTTTAGGTCTGCTGCTAAGTGCTGAATGGCCCGTAATAATAC TTGAAAAGATGTATCTGGGCAATTGGGCATGCACGTATTTGAATTGCTGTCGTTCATGGT ACTTCCGAGAATTTTATTAGGATGTGTTTGTGTTAATTTTGCTACTCCGCAGATGCTAAC GTATACTTTGTTTATGGTACTTTTGAGGATTTCACCCGAGTTTCTTACC