Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0549500-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:20535110:20538919:-1 gene:Os01g0549500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phox-like domain containing protein. (Os01t0549500-01);Phox-like domain containing protein. (Os01t0549500-02)
Sequence

ATGGAGCCAGCCCGACGATCCACCGCCGCGTCGGACGGCGGCGGCGGCTCGTCGGCGGCC
GGATCGGACGGCGAGGACGACAGGTACCTCAGCGCCAGCTCCGCGCTCGGCACGCCCAGC
TCCCTCGCCACCCTCCTCCCCTCCTCCGACCTCTGGGATCACCAGATGGACCTCCTCCTC
CTCGACGACCCCGTCGCCGGCTTCCCCAAGGCCCACCAGCTGACCCGCCTCCATCCGCCG
CCGGAGCCGCCGCGGCCCGATCCTCCCGCCCCCGCCGCGGCCGGCGACGCCGTTCTCCCG
CGGCCGCCGGAGCCGGATCCCACCCAGGTGGACAACCTTGATGACAATCATTTATTTGAT
GATATGGTTCAAGAGATGGAACATATTCTTCTCAATTCAGGGGAGCCCCATGAAAGTGCA
TCTTTTACAGATTATCGCGCAAATAATTCTTCCCAAGCTCATCATTTCAGAGATGGAAGC
ACCACTGCCTCTACTTCTGGTACAGATGATGCTTATGTATATCCCCTTCCTCACCATCCT
TCAAAAATTGATTGGGTGGAGGTTGTGGGAGCAAAGCAAAGAACAGGAGATGTTTCTTTT
GGTGAGCGAATGGTTGGGGTCAGAGAATATACTGTTTATTTGTTAAAAGTCAAGAGCGGA
GAAGATGACTGGGAAATTGAGAGGCGGTACCGTGAATTTTATGCTCTATACCAACAACTC
AAGCTCTTGTTTGCTGAGAAAGGTTTCAGTCTGCCTCCTGCATGGAGAAACGTTGAAAAA
GAATCAAGTAAATTATTTGGGAATGCATCCCCAGACATCGTCAATGAGAGAAGTAGTCTA
ATTCAAGACTGTTTGTGTTCTTTGCTTGTCTCTAGTTATCCATTTGGAACACCCACTCCT
CTGGTTAGTTTTTTGTCACCAGGGAGTCCTGCTTATGAGTATAGCTTGTTAAAAACTCTT
ATCCCAAGATCTTTGCAAAGGCTAAGCAGTGATTCACATTCCAAAGGCTCAAGCTGCAAT
GGAACTTCACACAAAGATTCTGCCTCAATGGGCAAGACTATATCACTTGTTGTGGAGGAT
AGGCCTCGGAAGTCCACTAGACAGTTGTTGGAGTTACAACACTACAATTGTGCTGGATGC
CATAGGCATTTGGATGCTGGGCGAACAATGCTGCAAGAAATTGTCCAAACAATCGGATGG
AACAAGCCTCGGTTTTGTGCTTACACTGGCCAATTGTTTTGTGCTTCTTGTCACACAAAT
GATACTGCAGTTCTGCCAGCAAAAGTGCTACACCACTGGGATTTCTCTTTATATCCTATT
TCCCAGTTAGCAAAAGCATATTTGGATTCCATCTATGACCAGCCTATGCTCTGTGTAAGT
GCTGTCAATCCTTTCCTCTTTGCAAAGGTGCCAGCTCTGCTTAATATTATGAGTATTCGG
AAGAAAATAGCAGCTATGCTTCCATGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGA
GGACTAGGAGCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTT
GTTGATCTTTCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAAT
CGGATACTTTTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGT
GCTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAGGAGGATGAA
GCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGC
ATATGTCCTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAA
GCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTCTCC
TCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAA
CCAAGAAATAGCAGCCCTGTAATTCTTATGGGTTCTTTGCCAGATACGTCTACATGA

Peptide Sequence

PEP ID

Os01t0549500-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:20535110:20538919:-1 gene:Os01g0549500 transcript:Os01t0549500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phox-like domain containing protein. (Os01t0549500-01);Phox-like domain containing protein. (Os01t0549500-02)
Sequence

MEPARRSTAASDGGGGSSAAGSDGEDDRYLSASSALGTPSSLATLLPSSDLWDHQMDLLL
LDDPVAGFPKAHQLTRLHPPPEPPRPDPPAPAAAGDAVLPRPPEPDPTQVDNLDDNHLFD
DMVQEMEHILLNSGEPHESASFTDYRANNSSQAHHFRDGSTTASTSGTDDAYVYPLPHHP
SKIDWVEVVGAKQRTGDVSFGERMVGVREYTVYLLKVKSGEDDWEIERRYREFYALYQQL
KLLFAEKGFSLPPAWRNVEKESSKLFGNASPDIVNERSSLIQDCLCSLLVSSYPFGTPTP
LVSFLSPGSPAYEYSLLKTLIPRSLQRLSSDSHSKGSSCNGTSHKDSASMGKTISLVVED
RPRKSTRQLLELQHYNCAGCHRHLDAGRTMLQEIVQTIGWNKPRFCAYTGQLFCASCHTN
DTAVLPAKVLHHWDFSLYPISQLAKAYLDSIYDQPMLCVSAVNPFLFAKVPALLNIMSIR
KKIAAMLPCVQCPFRNSIFRGLGARRYLLDGNDFFALRDLVDLSKGAFAALPVKVQTISN
RILLHITEQCLVCYDSGVPCAARQACDDPLALIFPFQEDEATKCGSCGSIFHKQCFRKIS
ICPCGKGAASKGRKIVALEQAVRDDASRPSTQLIQPSSFSSSSGFFSDIISKARPDKLWK
PRNSSPVILMGSLPDTST

Transcript Sequence

Transcript ID

Os01t0549500-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:20535110:20538919:-1 gene:Os01g0549500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phox-like domain containing protein. (Os01t0549500-01);Phox-like domain containing protein. (Os01t0549500-02)
Sequence

AGCAGCAGCAGCGGCGGCGGCGGGGGATCCAGCATGGAGCCAGCCCGACGATCCACCGCC
GCGTCGGACGGCGGCGGCGGCTCGTCGGCGGCCGGATCGGACGGCGAGGACGACAGGTAC
CTCAGCGCCAGCTCCGCGCTCGGCACGCCCAGCTCCCTCGCCACCCTCCTCCCCTCCTCC
GACCTCTGGGATCACCAGATGGACCTCCTCCTCCTCGACGACCCCGTCGCCGGCTTCCCC
AAGGCCCACCAGCTGACCCGCCTCCATCCGCCGCCGGAGCCGCCGCGGCCCGATCCTCCC
GCCCCCGCCGCGGCCGGCGACGCCGTTCTCCCGCGGCCGCCGGAGCCGGATCCCACCCAG
GTGGACAACCTTGATGACAATCATTTATTTGATGATATGGTTCAAGAGATGGAACATATT
CTTCTCAATTCAGGGGAGCCCCATGAAAGTGCATCTTTTACAGATTATCGCGCAAATAAT
TCTTCCCAAGCTCATCATTTCAGAGATGGAAGCACCACTGCCTCTACTTCTGGTACAGAT
GATGCTTATGTATATCCCCTTCCTCACCATCCTTCAAAAATTGATTGGGTGGAGGTTGTG
GGAGCAAAGCAAAGAACAGGAGATGTTTCTTTTGGTGAGCGAATGGTTGGGGTCAGAGAA
TATACTGTTTATTTGTTAAAAGTCAAGAGCGGAGAAGATGACTGGGAAATTGAGAGGCGG
TACCGTGAATTTTATGCTCTATACCAACAACTCAAGCTCTTGTTTGCTGAGAAAGGTTTC
AGTCTGCCTCCTGCATGGAGAAACGTTGAAAAAGAATCAAGTAAATTATTTGGGAATGCA
TCCCCAGACATCGTCAATGAGAGAAGTAGTCTAATTCAAGACTGTTTGTGTTCTTTGCTT
GTCTCTAGTTATCCATTTGGAACACCCACTCCTCTGGTTAGTTTTTTGTCACCAGGGAGT
CCTGCTTATGAGTATAGCTTGTTAAAAACTCTTATCCCAAGATCTTTGCAAAGGCTAAGC
AGTGATTCACATTCCAAAGGCTCAAGCTGCAATGGAACTTCACACAAAGATTCTGCCTCA
ATGGGCAAGACTATATCACTTGTTGTGGAGGATAGGCCTCGGAAGTCCACTAGACAGTTG
TTGGAGTTACAACACTACAATTGTGCTGGATGCCATAGGCATTTGGATGCTGGGCGAACA
ATGCTGCAAGAAATTGTCCAAACAATCGGATGGAACAAGCCTCGGTTTTGTGCTTACACT
GGCCAATTGTTTTGTGCTTCTTGTCACACAAATGATACTGCAGTTCTGCCAGCAAAAGTG
CTACACCACTGGGATTTCTCTTTATATCCTATTTCCCAGTTAGCAAAAGCATATTTGGAT
TCCATCTATGACCAGCCTATGCTCTGTGTAAGTGCTGTCAATCCTTTCCTCTTTGCAAAG
GTGCCAGCTCTGCTTAATATTATGAGTATTCGGAAGAAAATAGCAGCTATGCTTCCATGT
GTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGAGCTCGAAGATACCTTCTT
GATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTTTCGAAAGGGGCTTTTGCA
GCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTTTTACACATCACAGAACAA
TGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGGCAAGCTTGTGATGATCCG
CTAGCACTCATCTTTCCGTTTCAGGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCA
ATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCC
AGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCA
TCAACTCAGTTGATCCAACCCTCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATC
ATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTT
ATGGGTTCTTTGCCAGATACGTCTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATA
TTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAAGAGATGCCGTGGAG
CATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTG
CATCAAACGCTTC