Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0549400-02
CDS Infomation	cds chromosome:IRGSP-1.0:1:20523343:20528130:1 gene:Os01g0549400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RNA helicase-like protein DB10. (Os01t0549400-01);Similar to cDNA clone:J013059F16, full insert sequence. (Os01t0549400-02);Similar to predicted protein. (Os01t0549400-03);Similar to cDNA clone:J013059F16, full insert sequence. (Os01t0549400-04)
Sequence	ATGCTGTTAGAGCCTTTTCTACTTCACCTTGCGCATGCAAGTCAACACATCTTGGATGCA CTTTCTTTTATACAACGTGCTGGATTCTCAAGTCCAACGCCAATCCAAGCTCAGTCATGG CCAATTGCCTTGCAGTGTCAAGATGTTGTAGCTATTGCAAAGACAGGATCTGGAAAAACT CTTGGGTATCTACTTCCTGGATTTATGCATATTAAACGCTTGCAAAACAACCCAAGGTCT GGTCCAACAGTGCTAGTTTTGGCACCGACAAGGGAGCTTGCAACTCAGATTTTGGAAGAA GCTGTGAAATTTGGCAGATCATCAAGAATTTCTTCCACGTGTCTATATGGTGGTGCTCCA AAAGGCCCCCAGCTAAGAGATTTGGATAGAGGGGTCGATGTCGTTGTTGCTACACCAGGA AGGTTGAATGACATCCTAGAAATGCGAAGGATAAGCCTTAAGCAAGTGTCGTACCTTGTT CTAGATGAAGCTGACCGTATGTTGGACATGGGATTTGAACCACAAATTCGGAAGATAGTG AAAGAAATTCCTCCTCGTCGGCAAACCCTCATGTACACTGCTACTTGGCCTAAGGAAGTC CGACGAATTGCAGAGGATCTTCTTGTTCACCCTGTCCAGGTGACCATTGGAAGTGTTGAT GAGCTTGTTGCTAATAGTGCTATTACTCAGAATGTGGAGCTGATCACACCGTCCGAAAAG CTTCGCCGTCTGGAGCAAATTTTGCGATCCCAGGATTCAGGTTCGAAGGTACTAATATTC TGTACCACTAAGAGAATGTGCGACCAACTTGCAAGGACACTTACTAGGCAATTTGGAGCT TCTGCCATTCATGGTGATAAGTCCCAAAGTGAAAGAGAGAAGGTCCTGAGCCATTTTAGA TCTGGGCGATCTCCTATTTTGGTTGCAACAGATGTTGCTGCACGAGGCTTAGACATCAAA GATATCAGGGTTGTGATCAATTATGATTTCCCCACTGGCATTGAAGATTATGTTCACCGG ATTGGCAGGACTGGAAGGGCTGGTGCCACTGGTGTGGCCTATACGTTTTTCTGTGACCAG GATTCAAAATATGCTGCTGATCTTATTAAAATTCTGGAAGGCGCAAACCAACGTGTGCCT CGTGACTTGGCGGACATGGCCTCTCGGGGTGGGCGTGGTGGTAGGAAGCGTAACCGGTGG GCAACCCGCTCTGATAGGGGTGGTTCGCATTCTGAACTGGATTCTAGGTATGGTGGAAGA GATGGTCTGTCAGGGTCTTCTGGCAGATTGGATAGTAGTCGCAGTAGTCGCAGGCATGAC TATGGTGATGATGGACGGTCTCGCAGGTCTGGGAGAGGTCGCAGTAGGAGCCGTAGCAGA AGTGACAGTGATAGGTATAGCCGAAGTCCTAAGAGGTCACGCCGTCATAGCCGTAGCAGG ACCAGGAGTCGGAGCCGAAGCAGGAGCAGGAGCTACACTAGGAACCGTCGTGCTAGCCGC AGCAGGAGCCGTAGCCCTGGTGCTAGCCGTAGGCATGAAAGAAGCGCTACTGGCTCTGGG TCTGCACTGCCAGACTCTGGGCACGGTGAGCGCAAAAGAACACCAGAAGCTGACCCATCA AGAAACCATACAAACCACTCAGACCCGAAAGATGACCGACACCCAGAGGATGGGAAGGTG GGAAAGGTTGATCTCGATCGGTCGCCTACTCCACAAGACAAGTCTGGCCCATATAGTCCT GCTTACAATGGAAAAACCAGTCGCTCAGTGAGCCCTGGTAATCAGGTGGAAGGAAACAAC AAAGCTGCGGAGGTTTCTAAGAATCCTGATCCTTCATCGCCACCCCATCATGGTAAGACC AGGGAGGACGAAGAGGAAGGTATGATAGATGAAGATGGAGAGATAGCTGATGATCCTCGG GCAAATGCAACCGTGCAGAATGGCGGTGATAATTGA

Peptide Sequence

PEP ID	Os01t0549400-02
PEP Infomation	pep chromosome:IRGSP-1.0:1:20523343:20528130:1 gene:Os01g0549400 transcript:Os01t0549400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RNA helicase-like protein DB10. (Os01t0549400-01);Similar to cDNA clone:J013059F16, full insert sequence. (Os01t0549400-02);Similar to predicted protein. (Os01t0549400-03);Similar to cDNA clone:J013059F16, full insert sequence. (Os01t0549400-04)
Sequence	MLLEPFLLHLAHASQHILDALSFIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKT LGYLLPGFMHIKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAP KGPQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIV KEIPPRRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEK LRRLEQILRSQDSGSKVLIFCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLSHFR SGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQ DSKYAADLIKILEGANQRVPRDLADMASRGGRGGRKRNRWATRSDRGGSHSELDSRYGGR DGLSGSSGRLDSSRSSRRHDYGDDGRSRRSGRGRSRSRSRSDSDRYSRSPKRSRRHSRSR TRSRSRSRSRSYTRNRRASRSRSRSPGASRRHERSATGSGSALPDSGHGERKRTPEADPS RNHTNHSDPKDDRHPEDGKVGKVDLDRSPTPQDKSGPYSPAYNGKTSRSVSPGNQVEGNN KAAEVSKNPDPSSPPHHGKTREDEEEGMIDEDGEIADDPRANATVQNGGDN

Transcript Sequence

Transcript ID	Os01t0549400-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:20523343:20528130:1 gene:Os01g0549400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RNA helicase-like protein DB10. (Os01t0549400-01);Similar to cDNA clone:J013059F16, full insert sequence. (Os01t0549400-02);Similar to predicted protein. (Os01t0549400-03);Similar to cDNA clone:J013059F16, full insert sequence. (Os01t0549400-04)
Sequence	ATTATTTATCTACATCTCTGTGGCAGATGCGATATTTGCTCCAAAGGTGGAGCGAATGTC GTACGCTGCCTCGCGCACCCCTCGGCCAAATAAGAGCGGCGGGCTGAGGGAAGATGTCGT TGATGGAGTTGATAGAGTTGCTAAGGGTGGGTGAACACCCGAGGCGGCTCACCCCTGGCT CTCTCTCACTCCCTACCGAGGGACTGCCCATGGCGCAAAGGGGCACCCCATGTGGCGGCT CAACCTTGGCTTGCTCGCGCTTCCCGCCGAGGGATTGCCCATGGCGCAAAGGGGCACCCA TGGCGGCTGATTTGTTGCTCTGCATCCAATCCCTGGAGAAGGCTCCTCACATGGATGGTG GGCCTCTTCTGGGGCCTGGCCATGGAGGTCGCACCGTCCATAGGACCTGCGGGCAGCTGC TGGAGGGGCTTCGCACCCAGGCTGTCAACGTCCATACATAGGACCTGGACCTGCGGGCAG CTGCTGAAGGGGTCCTGTGGATGAACGATCCATGGTTGAGCGAGGCTGCCTCCAGGGATG CTGTTAGAGCCTTTTCTACTTCACCTTGCGCATGCAAGTCAACACATCTTGGATGCACTT TCTTTTATACAACGTGCTGGATTCTCAAGTCCAACGCCAATCCAAGCTCAGTCATGGCCA ATTGCCTTGCAGTGTCAAGATGTTGTAGCTATTGCAAAGACAGGATCTGGAAAAACTCTT GGGTATCTACTTCCTGGATTTATGCATATTAAACGCTTGCAAAACAACCCAAGGTCTGGT CCAACAGTGCTAGTTTTGGCACCGACAAGGGAGCTTGCAACTCAGATTTTGGAAGAAGCT GTGAAATTTGGCAGATCATCAAGAATTTCTTCCACGTGTCTATATGGTGGTGCTCCAAAA GGCCCCCAGCTAAGAGATTTGGATAGAGGGGTCGATGTCGTTGTTGCTACACCAGGAAGG TTGAATGACATCCTAGAAATGCGAAGGATAAGCCTTAAGCAAGTGTCGTACCTTGTTCTA GATGAAGCTGACCGTATGTTGGACATGGGATTTGAACCACAAATTCGGAAGATAGTGAAA GAAATTCCTCCTCGTCGGCAAACCCTCATGTACACTGCTACTTGGCCTAAGGAAGTCCGA CGAATTGCAGAGGATCTTCTTGTTCACCCTGTCCAGGTGACCATTGGAAGTGTTGATGAG CTTGTTGCTAATAGTGCTATTACTCAGAATGTGGAGCTGATCACACCGTCCGAAAAGCTT CGCCGTCTGGAGCAAATTTTGCGATCCCAGGATTCAGGTTCGAAGGTACTAATATTCTGT ACCACTAAGAGAATGTGCGACCAACTTGCAAGGACACTTACTAGGCAATTTGGAGCTTCT GCCATTCATGGTGATAAGTCCCAAAGTGAAAGAGAGAAGGTCCTGAGCCATTTTAGATCT GGGCGATCTCCTATTTTGGTTGCAACAGATGTTGCTGCACGAGGCTTAGACATCAAAGAT ATCAGGGTTGTGATCAATTATGATTTCCCCACTGGCATTGAAGATTATGTTCACCGGATT GGCAGGACTGGAAGGGCTGGTGCCACTGGTGTGGCCTATACGTTTTTCTGTGACCAGGAT TCAAAATATGCTGCTGATCTTATTAAAATTCTGGAAGGCGCAAACCAACGTGTGCCTCGT GACTTGGCGGACATGGCCTCTCGGGGTGGGCGTGGTGGTAGGAAGCGTAACCGGTGGGCA ACCCGCTCTGATAGGGGTGGTTCGCATTCTGAACTGGATTCTAGGTATGGTGGAAGAGAT GGTCTGTCAGGGTCTTCTGGCAGATTGGATAGTAGTCGCAGTAGTCGCAGGCATGACTAT GGTGATGATGGACGGTCTCGCAGGTCTGGGAGAGGTCGCAGTAGGAGCCGTAGCAGAAGT GACAGTGATAGGTATAGCCGAAGTCCTAAGAGGTCACGCCGTCATAGCCGTAGCAGGACC AGGAGTCGGAGCCGAAGCAGGAGCAGGAGCTACACTAGGAACCGTCGTGCTAGCCGCAGC AGGAGCCGTAGCCCTGGTGCTAGCCGTAGGCATGAAAGAAGCGCTACTGGCTCTGGGTCT GCACTGCCAGACTCTGGGCACGGTGAGCGCAAAAGAACACCAGAAGCTGACCCATCAAGA AACCATACAAACCACTCAGACCCGAAAGATGACCGACACCCAGAGGATGGGAAGGTGGGA AAGGTTGATCTCGATCGGTCGCCTACTCCACAAGACAAGTCTGGCCCATATAGTCCTGCT TACAATGGAAAAACCAGTCGCTCAGTGAGCCCTGGTAATCAGGTGGAAGGAAACAACAAA GCTGCGGAGGTTTCTAAGAATCCTGATCCTTCATCGCCACCCCATCATGGTAAGACCAGG GAGGACGAAGAGGAAGGTATGATAGATGAAGATGGAGAGATAGCTGATGATCCTCGGGCA AATGCAACCGTGCAGAATGGCGGTGATAATTGACTCTTTGGTCCCAAAAGAATTTAACAA ACTGCTGAGCAGCCACTACAGATGATCTGCGTGACAAAGCTCAAAATGTTAAAAATTGTC TGAAGCTGTCTTTTCGTAGTCAAAACTTAAGTTATGAAACTATCCGTGTCGTAGAGAGCT GGAGATTGTTTTGTGCCTGAGTTGTCTTATAACATTATATACTTTGTAGACCCTGTCGAA GTAGATCATGTGAAGTGAAGTTGGTAGCTCTGTTATTTGTGAACC