Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0546500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:20312947:20314161:-1 gene:Os01g0546500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0546500-01)
Sequence

ATGATGAGCTTGCAGATTCCGGCGAGATCCGGAGGGCTCCGCCGCCTCCTCCTCCTCGGA
GGGGCGGATGGGATCAGGAGGCCCTACTCCACGGGCGACCGCCGGCGCCGGGTGATCCGC
GAGGCGCGGCAGGAGGAGGAGGACGAGGCCTTCCTCCGCACCCTCAACTTCAGCGCCGAC
CCGGAGAACAACCCCCCGCCACCGCCGCCGCCGCCGCCTCGACGACCCGGAGGTGCCCCC
GACGACTCCTCCCCACACGCCGCGTTCCCCACCGACATCCTCCGACGCGCCGCCGGGAAA
CAGCCGTTGCCGCCGCCGCAGCAACCCATCGGGGAATCGCTGATGGAGAAGCTTAAGCTG
GGCGACGCAGCCGCCACCTCCGCCGCGGGAAACAGCGGCGAGCGGCCGCAGCCTGAGCGC
GAGCCGACGAAGCCGCCGCCGCCTGAGCACGAGGCGGCGCAGCCGGAGGACGTGGACGAG
ATCTTCAGGAAGATGAAGGAGACTGGGCTGATTCCGAACGCCGTCGCCATGCTCGACGGC
CTGTGCAAGAGCGGGCTGGTGCAGGAGGCCATGAAGCTGTTCGGTCTTATGCGAGAGAAG
GGTTCCATCCCTGAGGTTGTCGTCTACACCGCGGTTGTCGAGGCTTTCTGCAAGGCACGC
AAGCTTGACGATGCTGTGAGGATTTTCAAGAAGATGCAGGGGAATGGGGTTATTCCGAAC
GCCTTCAGCTACTGGTTGCTAATACAGGGGCTGTGCAAGGGTGGGAGGCTGGATGATGCA
GTTGCCTTCTGCGTGGAGATGTTTGAGGCTGGGCATTCGCCGAATGCCATGACCTTTGTG
GGCTTGGTTGATGAGGTATGCAAGGCTAAGGGGGTAGAGGAGGCTGAGAAGCTCGTGAGG
AGTTTCCAGGACAGGAACTTTGCCATTGATGAGAAGTCCATCAGGGAGCACTTGGACAAG
AAAGGTCCATTCTCGCCGGTCATTTGGGAGGTGATCTTTGGAAAGAAGAAATCAGGCCGA
CCATTTTGA

Peptide Sequence

PEP ID

Os01t0546500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:20312947:20314161:-1 gene:Os01g0546500 transcript:Os01t0546500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0546500-01)
Sequence

MMSLQIPARSGGLRRLLLLGGADGIRRPYSTGDRRRRVIREARQEEEDEAFLRTLNFSAD
PENNPPPPPPPPPRRPGGAPDDSSPHAAFPTDILRRAAGKQPLPPPQQPIGESLMEKLKL
GDAAATSAAGNSGERPQPEREPTKPPPPEHEAAQPEDVDEIFRKMKETGLIPNAVAMLDG
LCKSGLVQEAMKLFGLMREKGSIPEVVVYTAVVEAFCKARKLDDAVRIFKKMQGNGVIPN
AFSYWLLIQGLCKGGRLDDAVAFCVEMFEAGHSPNAMTFVGLVDEVCKAKGVEEAEKLVR
SFQDRNFAIDEKSIREHLDKKGPFSPVIWEVIFGKKKSGRPF

Transcript Sequence

Transcript ID

Os01t0546500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:20312947:20314161:-1 gene:Os01g0546500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0546500-01)
Sequence

CGGGAGAAGGAGAAGGGAGATGATGAGCTTGCAGATTCCGGCGAGATCCGGAGGGCTCCG
CCGCCTCCTCCTCCTCGGAGGGGCGGATGGGATCAGGAGGCCCTACTCCACGGGCGACCG
CCGGCGCCGGGTGATCCGCGAGGCGCGGCAGGAGGAGGAGGACGAGGCCTTCCTCCGCAC
CCTCAACTTCAGCGCCGACCCGGAGAACAACCCCCCGCCACCGCCGCCGCCGCCGCCTCG
ACGACCCGGAGGTGCCCCCGACGACTCCTCCCCACACGCCGCGTTCCCCACCGACATCCT
CCGACGCGCCGCCGGGAAACAGCCGTTGCCGCCGCCGCAGCAACCCATCGGGGAATCGCT
GATGGAGAAGCTTAAGCTGGGCGACGCAGCCGCCACCTCCGCCGCGGGAAACAGCGGCGA
GCGGCCGCAGCCTGAGCGCGAGCCGACGAAGCCGCCGCCGCCTGAGCACGAGGCGGCGCA
GCCGGAGGACGTGGACGAGATCTTCAGGAAGATGAAGGAGACTGGGCTGATTCCGAACGC
CGTCGCCATGCTCGACGGCCTGTGCAAGAGCGGGCTGGTGCAGGAGGCCATGAAGCTGTT
CGGTCTTATGCGAGAGAAGGGTTCCATCCCTGAGGTTGTCGTCTACACCGCGGTTGTCGA
GGCTTTCTGCAAGGCACGCAAGCTTGACGATGCTGTGAGGATTTTCAAGAAGATGCAGGG
GAATGGGGTTATTCCGAACGCCTTCAGCTACTGGTTGCTAATACAGGGGCTGTGCAAGGG
TGGGAGGCTGGATGATGCAGTTGCCTTCTGCGTGGAGATGTTTGAGGCTGGGCATTCGCC
GAATGCCATGACCTTTGTGGGCTTGGTTGATGAGGTATGCAAGGCTAAGGGGGTAGAGGA
GGCTGAGAAGCTCGTGAGGAGTTTCCAGGACAGGAACTTTGCCATTGATGAGAAGTCCAT
CAGGGAGCACTTGGACAAGAAAGGTCCATTCTCGCCGGTCATTTGGGAGGTGATCTTTGG
AAAGAAGAAATCAGGCCGACCATTTTGAGCTTTGCCAAAAGTAGTATGTGCACATTCTCA
CCATTTTGTGTAGCTATCGCCAGTGATGCTTTTTTGAGAGTTAGTGTGCTTCTCTGGTTA
CATTAAAATGTTTAGCATGATGTTCTATGTAACAATCACTACTATGCAATCCCCAAGTCT
GTCATCTTTTTTACA