Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0545900-00
CDS Infomation	cds chromosome:IRGSP-1.0:1:20280804:20282813:1 gene:Os01g0545900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0545900-00)
Sequence	ATGAAACTATTCTTTTGCGATAGCAAAATCACAATTTTCTCCATCCATGGTATGCGCGGG AATCTCCCGCCGCTCGCCGCCGTCACCGCCGCCGCCGCAAATGGCGCCGCCGTCCTCCTC CCACTCCCCCACGCGAAACAGCTCCACGCGCGCCTGCTCGTCTCCGGCCCCGCCCCACCC GACCACGACCTCCGCCTCCGCCTCCTCCTCCTCCGCTCCTACGCCGCGCGGGGCGACCTC GCCACCGCCGCCCGCCTGCTCGACGAGGCGCCGCCGCCCTCGCCCCTCCTCCACAACGCC CTCATCCGCGCCCACGCCCGCCGCCTCGACCTCCGCGCCGCGCTCGCGCTCTTCGCCCGC ATGCGCCGCTCCCGCTCCTCCGCCGCCACCGCCACCGCGCCCGACGCCCACACCTTCGCC TGCGTCCTCCGCGCCTGCGCCGACTGCTCGCGCCCCGACGTCGCCAGGGTCGTGAACGGG ATCGTGGTGTGCGCGGGGATGTCCTCGCATCCTGTCGTCGGAAGCGCGCTCGTCAGCGCT TACGCAAAGCTTGGGCCAGTCGGCGATGCTCGCCGCGTGTTCGATGGATTGCCTGAGCCG GATTTGGTTCTCTGGAACTGCATGATGTCTGGGTATGGGTACCGGGGAATGTGGAACGAT GGTCTTGATCTCTTCTCCGCAATGAGGAAAGCTGGGGAGCGACCGGATGGGTACTCAATG GTCAGCTTGGTCTCGTCTTTCTGGAATCGTGAGGCGCTAGCTTTCGGTCAAGCAATTCAT GGAATGTGTATCAAGGGAGGTTATGATTCAGGACACCATGTGAGGAGCGCACTTGTTAGC ATGTACTTCAGGTGTGGGTGCATGGATTCAGGCCACTCCTTGTTTGGTAATTTGCTGGAT GCAGATTTGGTTACATGGTCTTCACTAATTACAGGACTACTGCACATCTGCAAGTATGAG GAGTCATTTGGTTTGTTTCGGCAGATGTGCAACTCGGGTAGGAGACCTGACAGCATACTG GTTGCTAGTCTACTCTCGGCATGTGCTTCGATGGTAAATATTAGTTATAGCAAGGAGATA CATTGTTATGCATTCAGGGTTGGAGCTCACACTGACATCAGAGTCTCGTCTTCTCTGATG GATGCTTATTCAAAATGTGGTTTTGCTGATCTTGCATATGGAGTGTTCTTCCAAATGCCT GATAAGAATTTAGTTATGTACAATACAGTCATATCAAACCTTGGTTCTCACGGGTTTGCA ATGAAAGCTATTGAAGTCCTTGATGAGATGGTAAGTGACAAGCTCAAGCCTGACAGCGTA ACCTTCTCAGCATTACTTGCTGCATGCTGTCATGCAGGTCTCTTGGAGGAAGGGTGGAAG TTGTTTAGGAGAATGAGAGATGAGTTCAACATGGCGGTTAAAACAGAGCACTATGTATAT ATTGTGAGGCTTCTTGCAACATTTGGTCAGCTCAAGGAGGCGTATGGTCTTATACAAACG ATGCCAGCACCAGCAGATTCTGGTGTGTGGGGAGCATTGCTTTGGGGTTGCTGTGTCCAT CGTGATTCCAGCCTTGGTAGGATCGTTGCTGACAAGCTCTTTGAGTTATATCCAGACAAG GCTTCCTACAGGGTCATGCTTTCAAACCTTTATGCATCCCAGGAGATGTGGTGGGATGCT GAGGAGGTGAGGGAAGAGTTGTGGAATGAAGATGTGCATAAAAACACAGGGATTAGTTGG GTTGGCAATGCAAGGAAATAA

Peptide Sequence

PEP ID	Os01t0545900-00
PEP Infomation	pep chromosome:IRGSP-1.0:1:20280804:20282813:1 gene:Os01g0545900 transcript:Os01t0545900-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0545900-00)
Sequence	MKLFFCDSKITIFSIHGMRGNLPPLAAVTAAAANGAAVLLPLPHAKQLHARLLVSGPAPP DHDLRLRLLLLRSYAARGDLATAARLLDEAPPPSPLLHNALIRAHARRLDLRAALALFAR MRRSRSSAATATAPDAHTFACVLRACADCSRPDVARVVNGIVVCAGMSSHPVVGSALVSA YAKLGPVGDARRVFDGLPEPDLVLWNCMMSGYGYRGMWNDGLDLFSAMRKAGERPDGYSM VSLVSSFWNREALAFGQAIHGMCIKGGYDSGHHVRSALVSMYFRCGCMDSGHSLFGNLLD ADLVTWSSLITGLLHICKYEESFGLFRQMCNSGRRPDSILVASLLSACASMVNISYSKEI HCYAFRVGAHTDIRVSSSLMDAYSKCGFADLAYGVFFQMPDKNLVMYNTVISNLGSHGFA MKAIEVLDEMVSDKLKPDSVTFSALLAACCHAGLLEEGWKLFRRMRDEFNMAVKTEHYVY IVRLLATFGQLKEAYGLIQTMPAPADSGVWGALLWGCCVHRDSSLGRIVADKLFELYPDK ASYRVMLSNLYASQEMWWDAEEVREELWNEDVHKNTGISWVGNARK

Transcript Sequence

Transcript ID	Os01t0545900-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:20280804:20282813:1 gene:Os01g0545900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0545900-00)
Sequence	ATGAAACTATTCTTTTGCGATAGCAAAATCACAATTTTCTCCATCCATGGTATGCGCGGG AATCTCCCGCCGCTCGCCGCCGTCACCGCCGCCGCCGCAAATGGCGCCGCCGTCCTCCTC CCACTCCCCCACGCGAAACAGCTCCACGCGCGCCTGCTCGTCTCCGGCCCCGCCCCACCC GACCACGACCTCCGCCTCCGCCTCCTCCTCCTCCGCTCCTACGCCGCGCGGGGCGACCTC GCCACCGCCGCCCGCCTGCTCGACGAGGCGCCGCCGCCCTCGCCCCTCCTCCACAACGCC CTCATCCGCGCCCACGCCCGCCGCCTCGACCTCCGCGCCGCGCTCGCGCTCTTCGCCCGC ATGCGCCGCTCCCGCTCCTCCGCCGCCACCGCCACCGCGCCCGACGCCCACACCTTCGCC TGCGTCCTCCGCGCCTGCGCCGACTGCTCGCGCCCCGACGTCGCCAGGGTCGTGAACGGG ATCGTGGTGTGCGCGGGGATGTCCTCGCATCCTGTCGTCGGAAGCGCGCTCGTCAGCGCT TACGCAAAGCTTGGGCCAGTCGGCGATGCTCGCCGCGTGTTCGATGGATTGCCTGAGCCG GATTTGGTTCTCTGGAACTGCATGATGTCTGGGTATGGGTACCGGGGAATGTGGAACGAT GGTCTTGATCTCTTCTCCGCAATGAGGAAAGCTGGGGAGCGACCGGATGGGTACTCAATG GTCAGCTTGGTCTCGTCTTTCTGGAATCGTGAGGCGCTAGCTTTCGGTCAAGCAATTCAT GGAATGTGTATCAAGGGAGGTTATGATTCAGGACACCATGTGAGGAGCGCACTTGTTAGC ATGTACTTCAGGTGTGGGTGCATGGATTCAGGCCACTCCTTGTTTGGTAATTTGCTGGAT GCAGATTTGGTTACATGGTCTTCACTAATTACAGGACTACTGCACATCTGCAAGTATGAG GAGTCATTTGGTTTGTTTCGGCAGATGTGCAACTCGGGTAGGAGACCTGACAGCATACTG GTTGCTAGTCTACTCTCGGCATGTGCTTCGATGGTAAATATTAGTTATAGCAAGGAGATA CATTGTTATGCATTCAGGGTTGGAGCTCACACTGACATCAGAGTCTCGTCTTCTCTGATG GATGCTTATTCAAAATGTGGTTTTGCTGATCTTGCATATGGAGTGTTCTTCCAAATGCCT GATAAGAATTTAGTTATGTACAATACAGTCATATCAAACCTTGGTTCTCACGGGTTTGCA ATGAAAGCTATTGAAGTCCTTGATGAGATGGTAAGTGACAAGCTCAAGCCTGACAGCGTA ACCTTCTCAGCATTACTTGCTGCATGCTGTCATGCAGGTCTCTTGGAGGAAGGGTGGAAG TTGTTTAGGAGAATGAGAGATGAGTTCAACATGGCGGTTAAAACAGAGCACTATGTATAT ATTGTGAGGCTTCTTGCAACATTTGGTCAGCTCAAGGAGGCGTATGGTCTTATACAAACG ATGCCAGCACCAGCAGATTCTGGTGTGTGGGGAGCATTGCTTTGGGGTTGCTGTGTCCAT CGTGATTCCAGCCTTGGTAGGATCGTTGCTGACAAGCTCTTTGAGTTATATCCAGACAAG GCTTCCTACAGGGTCATGCTTTCAAACCTTTATGCATCCCAGGAGATGTGGTGGGATGCT GAGGAGGTGAGGGAAGAGTTGTGGAATGAAGATGTGCATAAAAACACAGGGATTAGTTGG GTTGGCAATGCAAGGAAATAATGATTGGGCATCTATCACTAAGAAACACTACAAAGATCA AATATAAATAAACTCTGTATTGTGTGCTCAGATAGAAATGTAATATTGTGAAATTACCTG AGACTTTATGTTTATTCAAATTGCCTTCAACATATATTCTTTTTTGTTCTATTATTCACA TAGCATTGTTTATGCTGTTCTTGTGTATAAGCATGTGATTTTAATATGCATCCATGAAAC TCTCCGTTTCTAATTCATGCATTGCATGTT