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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0541800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:19959667:19961939:1 gene:Os01g0541800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SWEET2A description:MtN3 and saliva related transmembrane protein family protein. (Os01t0541800-01)
Sequence

ATGATGAACGCTCTCGGTTTATCGGTGGCGGCCACCAGCACCGGCTCCCCCTTCCACGAC
GTCTGCTGCTATGGCGCTGGGATTGCAGGGAACATCTTCGCTCTTGTGCTCTTCATCTCC
CCGCTGCCGACGTTCAAGAGGATCGTCCGGAACGGATCGACGGAGCAGTTCTCGGCGATG
CCGTACATTTACTCGCTACTCAACTGCCTCATCTGTCTCTGGTACGGCCTCCCCTTCGTC
TCCTACGGCGTCGTCCTCGTCGCCACCGTCAACTCCATCGGCGCCCTCTTCCAGCTCGCC
TACACCGCCACCTTCATCGCATTCGCCGACGCCAAGAACAGGGTGAAGGTGTCCAGCCTG
CTGGTTATGGTGTTCGGCGTGTTCGCTCTAATTGTGTATGTTAGTCTGGCGTTGTTTGAT
CACCAAACACGGCAATTGTTCGTCGGTTACCTCAGCGTTGCGTCCCTCATATTCATGTTT
GCGTCCCCCTTGTCCATCATTAATCTGGTGATCAGGACGAAGAGCGTGGAGTACATGCCC
TTCTATTTGTCACTCTCTATGTTCTTGATGAGCGTATCGTTCTTCGCATATGGAGTTCTA
CTGCATGATTTCTTCATATATATTCCAAATGGGATTGGAACCGTTTTGGGTGTCATTCAA
TTGGTGCTCTATGGCTACTTCAGAAAAGGATCAAGAGAGGACAGCCTCCCATTGCTAGTC
ACACATACATGA

Peptide Sequence

PEP ID

Os01t0541800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:19959667:19961939:1 gene:Os01g0541800 transcript:Os01t0541800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SWEET2A description:MtN3 and saliva related transmembrane protein family protein. (Os01t0541800-01)
Sequence

MMNALGLSVAATSTGSPFHDVCCYGAGIAGNIFALVLFISPLPTFKRIVRNGSTEQFSAM
PYIYSLLNCLICLWYGLPFVSYGVVLVATVNSIGALFQLAYTATFIAFADAKNRVKVSSL
LVMVFGVFALIVYVSLALFDHQTRQLFVGYLSVASLIFMFASPLSIINLVIRTKSVEYMP
FYLSLSMFLMSVSFFAYGVLLHDFFIYIPNGIGTVLGVIQLVLYGYFRKGSREDSLPLLV
THT

Transcript Sequence

Transcript ID

Os01t0541800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:19959667:19961939:1 gene:Os01g0541800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SWEET2A description:MtN3 and saliva related transmembrane protein family protein. (Os01t0541800-01)
Sequence

AGCCAAGCCAGCCGCCCAAACCAGCAACCAAAGAAACAGCTAGAGAGAGAAAGAAACCCC
GGATTACGGATTCCTCCCTCCCCCAAAGGCCAAAGCCTCCCACCGCCGAGCCGCCGCCGC
CGCCGGCTTTCTTGTTTCTAGCTTCCTTTGATGATGAACGCTCTCGGTTTATCGGTGGCG
GCCACCAGCACCGGCTCCCCCTTCCACGACGTCTGCTGCTATGGCGCTGGGATTGCAGGG
AACATCTTCGCTCTTGTGCTCTTCATCTCCCCGCTGCCGACGTTCAAGAGGATCGTCCGG
AACGGATCGACGGAGCAGTTCTCGGCGATGCCGTACATTTACTCGCTACTCAACTGCCTC
ATCTGTCTCTGGTACGGCCTCCCCTTCGTCTCCTACGGCGTCGTCCTCGTCGCCACCGTC
AACTCCATCGGCGCCCTCTTCCAGCTCGCCTACACCGCCACCTTCATCGCATTCGCCGAC
GCCAAGAACAGGGTGAAGGTGTCCAGCCTGCTGGTTATGGTGTTCGGCGTGTTCGCTCTA
ATTGTGTATGTTAGTCTGGCGTTGTTTGATCACCAAACACGGCAATTGTTCGTCGGTTAC
CTCAGCGTTGCGTCCCTCATATTCATGTTTGCGTCCCCCTTGTCCATCATTAATCTGGTG
ATCAGGACGAAGAGCGTGGAGTACATGCCCTTCTATTTGTCACTCTCTATGTTCTTGATG
AGCGTATCGTTCTTCGCATATGGAGTTCTACTGCATGATTTCTTCATATATATTCCAAAT
GGGATTGGAACCGTTTTGGGTGTCATTCAATTGGTGCTCTATGGCTACTTCAGAAAAGGA
TCAAGAGAGGACAGCCTCCCATTGCTAGTCACACATACATGAGCACACCAAGGAACAAGG
TCCTGCAAGCAATTTGCCTGCCTTTGTTTCTTGGAAAATCATCGGTTCTCTTATCAGTTA
TCACATATTGGATTTTGTGTTGGTGGTGGTGTTTACTGTTCTTTTGTAAAATTGTTTTGT
GGTTTGAAATGTACAAATAGATTTTGGTATACCATATTGAAAGTAGTTTTCCAGCTCTGT
TGCTAGCTGCCACATCATTTCTTGGTTCTTGGATACCTTTGTATATCAGAAACAAAAATC
GTCACAATCTACAATTGGAGCTGTAAGAGGTGAAATTTATCTAGCTAAATCCGAAAGCTA
GCATTAACACTT