Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0534900-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:19394542:19405480:-1 gene:Os01g0534900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.1 description:Similar to Hv711N16.16 (Fragment). (Os01t0534900-01)
Sequence	ATGGCTACTATTCAAGATATAGGTGTCTCTGCAGCTATCAACATACTGAGTGCCATCACT TTCCTGCTAGCGTTTGCTTTCCTGCGACTACAGCCCATCAACGATAGGGTTTACTTCCCA AAGTGGTATCTCAAAGGTGCAAGAGAGAGTCCAAGTCATGGGGGTGCATTTGTGCGGAAG TTTGTCAATTTGGACATGCGATCATACTTGAAGGTCTTAAGTTGGATGCCTGCTGCTCTC AAAATGCCAGAGGATGAGTTAATTAGCCATGCAGGCCTTGATTCAGCTGTCTATCTGCGG ATCTACTTAATAGGGCTTAAAATATTTGCTCCAATCACAGTTCTAGCATTTATTATTCTT GTGCCTGTTAATTGGACCAATATTACCCTTCAAAGCTCGAAGGTGCAGCACAGTGATATT GACAAACTTTCAATATCCAACATACCTGTAGGGTCAAAGAGGTTCGCAGCTCACCTGACC ATGGCTTATGTTTTCACATTTTGGACATGCTATGTGCTGTTACGGGAGTATGAAATAGTG GCAACAATGCGTCTGCGCTTTCTTGCATCAGAGAAGCGCCGCCCAGATCAGTTCACGGTC CTTGTGCGGAATATACCGCCTGATCCTGATGAATCAATTGGTGAGCTTGTGGAACATTTC TTCCTTGTAAACCATCCTGACCATTATCTTACGCACCAGGTTGTCTATAATGCAAATAAG CTTGATAAGATGGTCAAAGAGAAGAAGAAAATGCAGAATTGGCTTGATTACTATCAGCTG AAATATGAAAGAAATACATCTCAAAGGCCTACTACAAAGACTGGTTTTCTTGGATGTTTT GGTTCAAAGGTGGATGCTATTGAATACTACACATCTGAAATTGAGAGGATAGAAAAGGAA GAAACTGATGAACGTGGAAAGATTATGAAGGATCCAAAATCAGTTGTGCCAGCAGCCTTT GTTTCCTTCCGATCGCGGTGGGGAGCAGCAGTGTGTGCTCAGACACAGCAAACCAGTAAT CCAACTGTCTGGTTGACCGAGTGGGCCCCAGAACCTCGTGATGTCTATTGGGATAACCTC TCTATTCCTTTTGTTTACCTGACAATTAGGAGGCTGATAATTGCGGTTGCATTCTTCTTC CTGAACTTCTTTTATGTGCTCCCGATTGCATTTGTTCAGTCCCTTGCAAATATTGAAGGG ATTGAGAAGGCAGCTCCATTTCTGAAGCCTTTGATTGAAATGCGTACTATTAAATCATTC ATCCAAGGATTTCTGCCAGGAATTGCTCTGAAGATTTTCCTTATATTGCTCCCTAGCATA TTAATGTTTATGTCTAAAGTTGAAGGATTGACATCGGTGTCCTCACTGGAGAGGAGATCT GCTTTTAAGTACTATATCTTCTTGTTCTTTAATGTATTCTTGGGAAGCATTATTGCAGGA TCTGCTTTAGAGCAGCTCAAAACATTTCTTCACCAATCAGCAAATGAAATACCAAGGACA ATTGGTGAAGCAATTCCAATGAAAGCAACCTTTTTTATAACATATGTAATGGTTGATGGT TGGGCTGGGGTAGCTGGTGAAATTTTAAGATTGAAACCATTGATAATCTTCCACTTGAAA AACTTTTTCTTGGTCAAGACTGAGAAAGACAGAGAAGAAGCAATGGACCCTGGAAGCATT GGTTTTGACTCAAATGAGCCTCAAATACAGCTCTATTTCTTGCTCGGACTTGTCTATGCT GTGGTGACACCATTTTTGCTTCCTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTA TACCGTCACCAGATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGG CCAAGTGTTCATGGACGCATAATTGTAGCATTAATCGTATCACAGCTGCTTCTCCTTGGA TTACTAAGCACAAAAGGTGCTGGCCAGTCAACACCGGTGCTCCTTGTTCTCCCTGTTGTA ACCTTTTATTTCTATAAATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCA TTACAGGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACCTC AAAGGATACCTGATGAATGCCTACATCCACCCGGTGTTCAAAGGCGACGAGGACGACGAG AAGTTCTCCATCTCCGACGAACCAGAGGCGGAGCAGGTTCTCGTGGCGACAAAGCGCCAG TCCAGACGGAACACCCCAGTTCCGAGTAAATACAATGGCTCTGAATCACCTTCCCTTGCT GAAATTGTAAATGATCAACGGCTATAA

Peptide Sequence

PEP ID	Os01t0534900-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:19394542:19405480:-1 gene:Os01g0534900 transcript:Os01t0534900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.1 description:Similar to Hv711N16.16 (Fragment). (Os01t0534900-01)
Sequence	MATIQDIGVSAAINILSAITFLLAFAFLRLQPINDRVYFPKWYLKGARESPSHGGAFVRK FVNLDMRSYLKVLSWMPAALKMPEDELISHAGLDSAVYLRIYLIGLKIFAPITVLAFIIL VPVNWTNITLQSSKVQHSDIDKLSISNIPVGSKRFAAHLTMAYVFTFWTCYVLLREYEIV ATMRLRFLASEKRRPDQFTVLVRNIPPDPDESIGELVEHFFLVNHPDHYLTHQVVYNANK LDKMVKEKKKMQNWLDYYQLKYERNTSQRPTTKTGFLGCFGSKVDAIEYYTSEIERIEKE ETDERGKIMKDPKSVVPAAFVSFRSRWGAAVCAQTQQTSNPTVWLTEWAPEPRDVYWDNL SIPFVYLTIRRLIIAVAFFFLNFFYVLPIAFVQSLANIEGIEKAAPFLKPLIEMRTIKSF IQGFLPGIALKIFLILLPSILMFMSKVEGLTSVSSLERRSAFKYYIFLFFNVFLGSIIAG SALEQLKTFLHQSANEIPRTIGEAIPMKATFFITYVMVDGWAGVAGEILRLKPLIIFHLK NFFLVKTEKDREEAMDPGSIGFDSNEPQIQLYFLLGLVYAVVTPFLLPFILIFFGLAYVV YRHQIINVYNQEYESAAAFWPSVHGRIIVALIVSQLLLLGLLSTKGAGQSTPVLLVLPVV TFYFYKYCKNRYEPAFVEYPLQDAMRKDTLERAREPGFDLKGYLMNAYIHPVFKGDEDDE KFSISDEPEAEQVLVATKRQSRRNTPVPSKYNGSESPSLAEIVNDQRL

Transcript Sequence

Transcript ID	Os01t0534900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:19394542:19405480:-1 gene:Os01g0534900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.1 description:Similar to Hv711N16.16 (Fragment). (Os01t0534900-01)
Sequence	GCCCGTTTCCCCTTCTCGGCTTCGTCGCCTTCTTCTCCTCCTCGAACAGAAGAGTCGGAC CCTTCCAAAAGCGACGGGTAGATTGCCAGCCAGCCCAACTCCTTCCTACTCCTGGTACTA CTCCTACATAAGAAGAAGTCCTCCCGACTCCCATCGCGATCCCTCGCCCTGCTCTGCTGC AGTGGGAGTAGGACAAGCGGCCGCGTCGCTCTCCGGTTCCATCCATCCACGGAGTAGTAG AGTGTGCCAGTATTAGTACGAGTGGCAGTTTATTCTGCGTCCTGCTTCGTTCGTCGGTGA GGAGGAGGAGGAGGAGAGAGGGAGGGGGGCAGAGTGGGCGCGGCGGCATTTCGGAGGGGG ATGTGTAGCGGCGGCGGCGGCTAGGGTGGTGGTTTGCTGTTCTTCGAGGACAAATATGGC TACTATTCAAGATATAGGTGTCTCTGCAGCTATCAACATACTGAGTGCCATCACTTTCCT GCTAGCGTTTGCTTTCCTGCGACTACAGCCCATCAACGATAGGGTTTACTTCCCAAAGTG GTATCTCAAAGGTGCAAGAGAGAGTCCAAGTCATGGGGGTGCATTTGTGCGGAAGTTTGT CAATTTGGACATGCGATCATACTTGAAGGTCTTAAGTTGGATGCCTGCTGCTCTCAAAAT GCCAGAGGATGAGTTAATTAGCCATGCAGGCCTTGATTCAGCTGTCTATCTGCGGATCTA CTTAATAGGGCTTAAAATATTTGCTCCAATCACAGTTCTAGCATTTATTATTCTTGTGCC TGTTAATTGGACCAATATTACCCTTCAAAGCTCGAAGGTGCAGCACAGTGATATTGACAA ACTTTCAATATCCAACATACCTGTAGGGTCAAAGAGGTTCGCAGCTCACCTGACCATGGC TTATGTTTTCACATTTTGGACATGCTATGTGCTGTTACGGGAGTATGAAATAGTGGCAAC AATGCGTCTGCGCTTTCTTGCATCAGAGAAGCGCCGCCCAGATCAGTTCACGGTCCTTGT GCGGAATATACCGCCTGATCCTGATGAATCAATTGGTGAGCTTGTGGAACATTTCTTCCT TGTAAACCATCCTGACCATTATCTTACGCACCAGGTTGTCTATAATGCAAATAAGCTTGA TAAGATGGTCAAAGAGAAGAAGAAAATGCAGAATTGGCTTGATTACTATCAGCTGAAATA TGAAAGAAATACATCTCAAAGGCCTACTACAAAGACTGGTTTTCTTGGATGTTTTGGTTC AAAGGTGGATGCTATTGAATACTACACATCTGAAATTGAGAGGATAGAAAAGGAAGAAAC TGATGAACGTGGAAAGATTATGAAGGATCCAAAATCAGTTGTGCCAGCAGCCTTTGTTTC CTTCCGATCGCGGTGGGGAGCAGCAGTGTGTGCTCAGACACAGCAAACCAGTAATCCAAC TGTCTGGTTGACCGAGTGGGCCCCAGAACCTCGTGATGTCTATTGGGATAACCTCTCTAT TCCTTTTGTTTACCTGACAATTAGGAGGCTGATAATTGCGGTTGCATTCTTCTTCCTGAA CTTCTTTTATGTGCTCCCGATTGCATTTGTTCAGTCCCTTGCAAATATTGAAGGGATTGA GAAGGCAGCTCCATTTCTGAAGCCTTTGATTGAAATGCGTACTATTAAATCATTCATCCA AGGATTTCTGCCAGGAATTGCTCTGAAGATTTTCCTTATATTGCTCCCTAGCATATTAAT GTTTATGTCTAAAGTTGAAGGATTGACATCGGTGTCCTCACTGGAGAGGAGATCTGCTTT TAAGTACTATATCTTCTTGTTCTTTAATGTATTCTTGGGAAGCATTATTGCAGGATCTGC TTTAGAGCAGCTCAAAACATTTCTTCACCAATCAGCAAATGAAATACCAAGGACAATTGG TGAAGCAATTCCAATGAAAGCAACCTTTTTTATAACATATGTAATGGTTGATGGTTGGGC TGGGGTAGCTGGTGAAATTTTAAGATTGAAACCATTGATAATCTTCCACTTGAAAAACTT TTTCTTGGTCAAGACTGAGAAAGACAGAGAAGAAGCAATGGACCCTGGAAGCATTGGTTT TGACTCAAATGAGCCTCAAATACAGCTCTATTTCTTGCTCGGACTTGTCTATGCTGTGGT GACACCATTTTTGCTTCCTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCG TCACCAGATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCAAG TGTTCATGGACGCATAATTGTAGCATTAATCGTATCACAGCTGCTTCTCCTTGGATTACT AAGCACAAAAGGTGCTGGCCAGTCAACACCGGTGCTCCTTGTTCTCCCTGTTGTAACCTT TTATTTCTATAAATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACA GGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACCTCAAAGG ATACCTGATGAATGCCTACATCCACCCGGTGTTCAAAGGCGACGAGGACGACGAGAAGTT CTCCATCTCCGACGAACCAGAGGCGGAGCAGGTTCTCGTGGCGACAAAGCGCCAGTCCAG ACGGAACACCCCAGTTCCGAGTAAATACAATGGCTCTGAATCACCTTCCCTTGCTGAAAT TGTAAATGATCAACGGCTATAAATATAATAGAGGTGATGGCTAGTAGGTTTGTAGTTTCG ACATGTACATTAAAGAGCACCAATAATGGTTTTGAGGATCGGTTTTGTTTACAGCAAGGA GGAATGGCAAAATATATATATATATACCAATGGGCTCC