Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0532600-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:19242042:19243812:1 gene:Os01g0532600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HIGH-AFFINITY K+ TRANSPORTER 3 description:Similar to HKT1 (High-affinity potassium uptake transporter). (Os01t0532600-00)
Sequence

ATGCCTATTCGGCTGCATATCTTTGTCAATTCTGCAAGGCATGCCATCAACTCATCGGCA
TTCATTTGTCGGTTCATCGCATACCATCTTAGCCCGCTTTTGATTCACTTATCCTATTTT
CTTATCATTGATATACTTGGTTTTGTTTCCTTGGTGGTGCTCAGGCCAAGCAACCACAAG
TACAATCCTCGCTATGTTGATATGTTTTTCCTATCGACATCTGCAGTTACAGTCATAGGA
TTAGCCACCATACAAATGGAGGATCTTTCCAGCTCTCAGATAGCTATCCTGACTCTCTTG
ATGTTCTTAGACAGTAAGATGTTCCTTTCCTTTCTTGGCCTTGTCCTTGAGTCAAGCAAG
CAAAACAAGCATGATCCTGAAAACCGTAGAGTCAGTTCAGTTACTGTGTGCAAGCAATCA
CAGCTAGAAGAGGCGACTCCCCAAACTCCATCCATGAACTCCATTGATATCAAGAAGAGA
TGCCTCAAATACTTAGTGTTTGTGGTGCTGGCATACATGATCATTATTCTTGTCACTGGT
TCTCTATTGGTGTTCATGTACATAGCTCATGTTTCAAGTGCTAGAGATGTGCTAACAAGG
AAAAGCATCAACAAAGCTCTCTTCTCGATATCGGTCACAGTCTCCTCATTCACAAATGGA
GGGTTATTGCCGACAAATGAGAGTATGGTTGTATTCTCCTCAAACAATGGCCTCCTGTTG
CTACTCATTGGCCAGATTCTTGCAGGCAGCACACTGTTCCCTGTGTTTCTGAGGTTGGTG
ATATGGGCATTGAGAGGACTAAGATTAGCAAAAGCTGAAGAGCCTGACTTCATGATGAAC
AACAGCAGCGCAGTAGGTTTCAGTCACCTGCTGCCTAACTTGCAGACAATATTTCTTGCA
GTTGTGGAGGTTGCTTTTGTAGCCATGACAGTCATCCTCTTCTGCTGCTTGAACTGGGAT
TCTGTAGTGTTTGCAGGGCTCAGCTCCCTCCAGAAGATAACCAATGCATTGTTCATGGCA
GTGAATGCAAGGCAGGCAGGAGAAAATTCCATTGATTGTTCCCTTGTTGCGCCAGCGGCT
TTAGTACTATTCATGGTCATGATGTACACTCCATCCTTGACAAAGTTGTTCTCAGCATGT
CAAGATCACAAACGAATCGGCCCAGAAAGCGACGATAGAACAAGCAAGGGGAAACCATTC
CTGAAGATGATGGCATTTTCACCACTCGGCTTCAACACCACAGTGATAATGCTGGTCTGC
ATCACTGAAAGGAGATCACTCTCCACTGACCCTCTCAATTTATCCACATTTAACATCATC
TTTGAGGTGATAAGTGCCTACGGGAACATTGGGTTGTCCACTGGCTACAGCTGCTCGAGG
CAGCTGCAGCACCAGGAGGGGATTGCCTGCCATGAGAAGGCGTACAACTTCTCGGGGTGG
TGGAGTGAACCAGGGAAACTGATTCTTGTTCTTGCAATGCTCTGCGGGAGGCTCAACTCA
AAGGATTCCACAAGCGCACGAACTAGGTGA

Peptide Sequence

PEP ID

Os01t0532600-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:19242042:19243812:1 gene:Os01g0532600 transcript:Os01t0532600-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HIGH-AFFINITY K+ TRANSPORTER 3 description:Similar to HKT1 (High-affinity potassium uptake transporter). (Os01t0532600-00)
Sequence

MPIRLHIFVNSARHAINSSAFICRFIAYHLSPLLIHLSYFLIIDILGFVSLVVLRPSNHK
YNPRYVDMFFLSTSAVTVIGLATIQMEDLSSSQIAILTLLMFLDSKMFLSFLGLVLESSK
QNKHDPENRRVSSVTVCKQSQLEEATPQTPSMNSIDIKKRCLKYLVFVVLAYMIIILVTG
SLLVFMYIAHVSSARDVLTRKSINKALFSISVTVSSFTNGGLLPTNESMVVFSSNNGLLL
LLIGQILAGSTLFPVFLRLVIWALRGLRLAKAEEPDFMMNNSSAVGFSHLLPNLQTIFLA
VVEVAFVAMTVILFCCLNWDSVVFAGLSSLQKITNALFMAVNARQAGENSIDCSLVAPAA
LVLFMVMMYTPSLTKLFSACQDHKRIGPESDDRTSKGKPFLKMMAFSPLGFNTTVIMLVC
ITERRSLSTDPLNLSTFNIIFEVISAYGNIGLSTGYSCSRQLQHQEGIACHEKAYNFSGW
WSEPGKLILVLAMLCGRLNSKDSTSARTR

Transcript Sequence

Transcript ID

Os01t0532600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:19242042:19243812:1 gene:Os01g0532600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HIGH-AFFINITY K+ TRANSPORTER 3 description:Similar to HKT1 (High-affinity potassium uptake transporter). (Os01t0532600-00)
Sequence

CTCTGCCCTCTATCTCCAATGCCTATTCGGCTGCATATCTTTGTCAATTCTGCAAGGCAT
GCCATCAACTCATCGGCATTCATTTGTCGGTTCATCGCATACCATCTTAGCCCGCTTTTG
ATTCACTTATCCTATTTTCTTATCATTGATATACTTGGTTTTGTTTCCTTGGTGGTGCTC
AGGCCAAGCAACCACAAGTACAATCCTCGCTATGTTGATATGTTTTTCCTATCGACATCT
GCAGTTACAGTCATAGGATTAGCCACCATACAAATGGAGGATCTTTCCAGCTCTCAGATA
GCTATCCTGACTCTCTTGATGTTCTTAGACAGTAAGATGTTCCTTTCCTTTCTTGGCCTT
GTCCTTGAGTCAAGCAAGCAAAACAAGCATGATCCTGAAAACCGTAGAGTCAGTTCAGTT
ACTGTGTGCAAGCAATCACAGCTAGAAGAGGCGACTCCCCAAACTCCATCCATGAACTCC
ATTGATATCAAGAAGAGATGCCTCAAATACTTAGTGTTTGTGGTGCTGGCATACATGATC
ATTATTCTTGTCACTGGTTCTCTATTGGTGTTCATGTACATAGCTCATGTTTCAAGTGCT
AGAGATGTGCTAACAAGGAAAAGCATCAACAAAGCTCTCTTCTCGATATCGGTCACAGTC
TCCTCATTCACAAATGGAGGGTTATTGCCGACAAATGAGAGTATGGTTGTATTCTCCTCA
AACAATGGCCTCCTGTTGCTACTCATTGGCCAGATTCTTGCAGGCAGCACACTGTTCCCT
GTGTTTCTGAGGTTGGTGATATGGGCATTGAGAGGACTAAGATTAGCAAAAGCTGAAGAG
CCTGACTTCATGATGAACAACAGCAGCGCAGTAGGTTTCAGTCACCTGCTGCCTAACTTG
CAGACAATATTTCTTGCAGTTGTGGAGGTTGCTTTTGTAGCCATGACAGTCATCCTCTTC
TGCTGCTTGAACTGGGATTCTGTAGTGTTTGCAGGGCTCAGCTCCCTCCAGAAGATAACC
AATGCATTGTTCATGGCAGTGAATGCAAGGCAGGCAGGAGAAAATTCCATTGATTGTTCC
CTTGTTGCGCCAGCGGCTTTAGTACTATTCATGGTCATGATGTACACTCCATCCTTGACA
AAGTTGTTCTCAGCATGTCAAGATCACAAACGAATCGGCCCAGAAAGCGACGATAGAACA
AGCAAGGGGAAACCATTCCTGAAGATGATGGCATTTTCACCACTCGGCTTCAACACCACA
GTGATAATGCTGGTCTGCATCACTGAAAGGAGATCACTCTCCACTGACCCTCTCAATTTA
TCCACATTTAACATCATCTTTGAGGTGATAAGTGCCTACGGGAACATTGGGTTGTCCACT
GGCTACAGCTGCTCGAGGCAGCTGCAGCACCAGGAGGGGATTGCCTGCCATGAGAAGGCG
TACAACTTCTCGGGGTGGTGGAGTGAACCAGGGAAACTGATTCTTGTTCTTGCAATGCTC
TGCGGGAGGCTCAACTCAAAGGATTCCACAAGCGCACGAACTAGGTGATGATGATCAGAA
GCGATCAGTATGCGATCGATGTTCTGC