Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0531000-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:19110942:19114994:-1 gene:Os01g0531000 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNAse P, Rpr2/Rpp21 subunit domain containing protein. (Os01t0531000-01)
Sequence

GGGTCCAGCACCTGCAACGCCGAGGCGGCCGGGATACCTCTGGCCGCCTCCACCTTCCTA
TGCCAGAGGTGTGAAACAGTCTTACAGCCAGGCTTCAACTGCACAATCCGCATAAAGAAC
AACAAAAGAAAAGCAAAGCGACGCAAGAAGTTAAACACTTGCCAGAACAGCATTTCTTAC
CTGTGCCATTTCTGTGGAGACCAAAACCTAATAAGGGGCAGCGGAAAGAATATTATGAAG
GGCTTGTTATCATCAAGAAAGCCAGTTGGCATGGATGTAACCAGCATAAAGTTGAAAGGG
GACAGTAATAACAAGAGATTAGTAACTATAAAAGAGGGCTTTGAATATTCTCAGGCAGCG
GTCTCACAACTAGAGTCAACATCTGGGTTGAAACAACAAAATCTTGAAAAGAATGAGTAT
GAGGAAAGTCCAGTACCCAATCTTCTTGACGAATCTATGGAAAAGGAGGTAGCGTGTTCA
TCGGTGGAACTGAATCAGTCAGCATCAGCTACTGATCAGGAGAATGTCTCACAGAAAATA
GTGGTAACAATCACAAGTGAAAAAGGTATGCATGAAACTGAGCCTGTTTCTGCTAACAAA
ATTGCAATATGCCAACCCGATTTTCCTTCAAAAGCAGAATTTCCAGTCGGATCAAGTTTT
GTTACTCCTCGAAAGAACAAACTGGTGGATGTGACGGACCATAAGGATTCTGCAGAACTG
GTCAAGACAAGAAGCATTCAGAACAAGAAAGGGGAGATGCCAAGTTCAGTTACTGGCAAG
GCCCCTACAATGCCTACCAAGTCAGCTCCAAAGGACCGTGTGAAAAATAAATCTGTAGCA
AGTGGTTCTGCTCAGATGTCTGGTAGTTCAAGGAAGCGGGCAAGAAAGGGGTGGACTACG
CTGAAACAGATTGCTGAAAAGGAAGAGCTTGAGAGAAAAGAGAAGATGGGTAACTTTGTA
ATACCATTCTTTATGCAATAA

Peptide Sequence

PEP ID

Os01t0531000-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:19110942:19114994:-1 gene:Os01g0531000 transcript:Os01t0531000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNAse P, Rpr2/Rpp21 subunit domain containing protein. (Os01t0531000-01)
Sequence

GSSTCNAEAAGIPLAASTFLCQRCETVLQPGFNCTIRIKNNKRKAKRRKKLNTCQNSISY
LCHFCGDQNLIRGSGKNIMKGLLSSRKPVGMDVTSIKLKGDSNNKRLVTIKEGFEYSQAA
VSQLESTSGLKQQNLEKNEYEESPVPNLLDESMEKEVACSSVELNQSASATDQENVSQKI
VVTITSEKGMHETEPVSANKIAICQPDFPSKAEFPVGSSFVTPRKNKLVDVTDHKDSAEL
VKTRSIQNKKGEMPSSVTGKAPTMPTKSAPKDRVKNKSVASGSAQMSGSSRKRARKGWTT
LKQIAEKEELERKEKMGNFVIPFFMQ

Transcript Sequence

Transcript ID

Os01t0531000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:19110942:19114994:-1 gene:Os01g0531000 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNAse P, Rpr2/Rpp21 subunit domain containing protein. (Os01t0531000-01)
Sequence

ATGCCCCGGCGGCGCCGCCCAGGGCCGGGAACCAGGCGGTGTCGCTCCGCGAGGAGAGCT
CCGGGAAGACGCGCGCTGACGCGGCCTCCCTGCTGAGGGTCCAGCACCTGCAACGCCGAG
GCGGCCGGGATACCTCTGGCCGCCTCCACCTTCCTATGCCAGAGGTGTGAAACAGTCTTA
CAGCCAGGCTTCAACTGCACAATCCGCATAAAGAACAACAAAAGAAAAGCAAAGCGACGC
AAGAAGTTAAACACTTGCCAGAACAGCATTTCTTACCTGTGCCATTTCTGTGGAGACCAA
AACCTAATAAGGGGCAGCGGAAAGAATATTATGAAGGGCTTGTTATCATCAAGAAAGCCA
GTTGGCATGGATGTAACCAGCATAAAGTTGAAAGGGGACAGTAATAACAAGAGATTAGTA
ACTATAAAAGAGGGCTTTGAATATTCTCAGGCAGCGGTCTCACAACTAGAGTCAACATCT
GGGTTGAAACAACAAAATCTTGAAAAGAATGAGTATGAGGAAAGTCCAGTACCCAATCTT
CTTGACGAATCTATGGAAAAGGAGGTAGCGTGTTCATCGGTGGAACTGAATCAGTCAGCA
TCAGCTACTGATCAGGAGAATGTCTCACAGAAAATAGTGGTAACAATCACAAGTGAAAAA
GGTATGCATGAAACTGAGCCTGTTTCTGCTAACAAAATTGCAATATGCCAACCCGATTTT
CCTTCAAAAGCAGAATTTCCAGTCGGATCAAGTTTTGTTACTCCTCGAAAGAACAAACTG
GTGGATGTGACGGACCATAAGGATTCTGCAGAACTGGTCAAGACAAGAAGCATTCAGAAC
AAGAAAGGGGAGATGCCAAGTTCAGTTACTGGCAAGGCCCCTACAATGCCTACCAAGTCA
GCTCCAAAGGACCGTGTGAAAAATAAATCTGTAGCAAGTGGTTCTGCTCAGATGTCTGGT
AGTTCAAGGAAGCGGGCAAGAAAGGGGTGGACTACGCTGAAACAGATTGCTGAAAAGGAA
GAGCTTGAGAGAAAAGAGAAGATGGGTAACTTTGTAATACCATTCTTTATGCAATAAGAG
ATGTTACAACTCACGCTGATTGTAAGCTTTATTCTTGGTGTATTTGTTGAGAATAGCATA
CAAAATTTTGATCATATTTTGAGTTACT