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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0530400-03
CDS Infomation

cds chromosome:IRGSP-1.0:1:19089969:19093892:1 gene:Os01g0530400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GLUTAREDOXIN 5 description:Thioredoxin fold domain containing protein. (Os01t0530400-01);Similar to cDNA clone:002-104-C07, full insert sequence. (Os01t0530400-02);Thioredoxin fold domain containing protein. (Os01t0530400-03)
Sequence

ATGGCGAGATTGATGTCGTCCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCG
ACCGTAGCTGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTT
GGTGGCGATTCTACTGCAACTGGGGACTCAAGTTCAACACGAGTTGCTGCTGATCCTGAT
ACACATCAAGATTTCCAGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTT
TCTCAGGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCTCCT
AGGTGTGGGTTCAGTGCGTTGGCAGTTAGAGTCCTCAAGCAATATGATGTCCCTATCAGT
GCTAGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACCAACTGG
CCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTA
GATATGCATCAGAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAA
CAAAACGAATCATCATGA

Peptide Sequence

PEP ID

Os01t0530400-03
PEP Infomation

pep chromosome:IRGSP-1.0:1:19089969:19093892:1 gene:Os01g0530400 transcript:Os01t0530400-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GLUTAREDOXIN 5 description:Thioredoxin fold domain containing protein. (Os01t0530400-01);Similar to cDNA clone:002-104-C07, full insert sequence. (Os01t0530400-02);Thioredoxin fold domain containing protein. (Os01t0530400-03)
Sequence

MARLMSSALIRGLVRSSCSPTVAAVAQPTIHQFRNYSSGLGGDSTATGDSSSTRVAADPD
THQDFQPTTKSSNMSFDDIVSQDIKENPVLIYMKGYPDAPRCGFSALAVRVLKQYDVPIS
ARDILGDLKLKESVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVLGDIAQKRE
QNESS

Transcript Sequence

Transcript ID

Os01t0530400-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:19089969:19093892:1 gene:Os01g0530400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GLUTAREDOXIN 5 description:Thioredoxin fold domain containing protein. (Os01t0530400-01);Similar to cDNA clone:002-104-C07, full insert sequence. (Os01t0530400-02);Thioredoxin fold domain containing protein. (Os01t0530400-03)
Sequence

GCTAGCCGCTCCTTCTCCTCTGTCGCCGGCGGCGCCTCCGACCACCGCAGGGCTCCGTCC
CGCCGCCTCCCAGGGTAGTCATGGCGAGATTGATGTCGTCCGCCCTCATCAGGGGTCTCG
TGAGATCGAGCTGCTCGCCGACCGTAGCTGCTGTGGCCCAACCAACTATCCATCAGTTTA
GGAACTACTCATCAGGACTTGGTGGCGATTCTACTGCAACTGGGGACTCAAGTTCAACAC
GAGTTGCTGCTGATCCTGATACACATCAAGATTTCCAGCCTACAACCAAAAGTTCCAACA
TGTCTTTTGATGACATTGTTTCTCAGGATATCAAGGAGAACCCAGTCCTGATCTACATGA
AGGGTTATCCTGATGCTCCTAGGTGTGGGTTCAGTGCGTTGGCAGTTAGAGTCCTCAAGC
AATATGATGTCCCTATCAGTGCTAGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTG
TCAAAGCCCACACCAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTG
GGGGATCTGATATCATATTAGATATGCATCAGAAGGGTCAGCTTAAGGATGTGCTTGGTG
ATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTT
TGTCACAACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATCTGAAAACCACAC
TTAAAGTTTGACTGCAATGGTTAATGTGACAGGACAAAACGTTATCGAGATAAAAGCGAT
ATGTCATTTTCAGTTTTTCACAGAAAAGAAATGCAATATGGCTTGTTGCATTACAGCGGA
TTCTGTGTCTATTGGATTATCAATCTATGAAGCCAAATTAGTTTGTTTCTGGGCAATAAT
GTGTGAGCTCCACAGTACATCACTTATGAAACAAAGCTTTACATAACAAATTAGTGTTTG
TTTTTTTTTAGCTTTGATCTCCCCAGTGGCTGGGATAGTTATTTTATTCCGTCGTGTAGC
TTCTTTTAAATGCGATATGCCATATTCACAAAGGAATCATATGCCATCTC