Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0529800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:19059236:19061167:1 gene:Os01g0529800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Very-long-chain fatty acid condensing enzyme CUT1. (Os01t0529800-01)
Sequence

ATGCTGCTCCTCAAGGCCGTGTACCGCGTGGTGGTGAACAACTTCCTCGCCCTCGCCGCG
GCGGCCGTCGCGGCCGTGCTGCTCCGGCGCCCCGACGAGCTCGCCGCGCGGCTGCGCGCG
GTGTCGTCCCCGCTGCACGCCGCCACGGCGGCGGTGCTCGCGGCGGGCGTGGCGAGGCTG
GTGCGCGCGCGGCGGGCGCGGGGCGTGTACCTGGTGGAGTACGGGTGCTTCCGCCCCAGG
CCGTGCTACCGGGCCCCGTTCGCGACGTGCCTGGAGCACGCCCACCTGATGCCGTACCTG
GTGGACGAGGAGAGCGTCGCGTTCGCCATCCGGCTGCTGGAGCGGTCGGGGCTCGGCGAC
GAGACGTGCGTCCCCGACGCGTACCACTACATGCCGCCCGACCGGAGCCTCAGGGCGTCG
CGCGACGAGTCGGAGCTGGTCATCTTCTCCGCCGTCGACGACGTGTTCGCCAGGTCGGCC
CTGACGCCCGCCGACATCGACGTGCTCATCGTCAACTGCAGCATCTTCACCCCGACGCCC
GTGTTCGCCGACATGGTCGTCAACAGGTACAAGCTCCGCGCCGAGGTGCAGAACGTGAAC
CTGTCCGGGATGGGGTGCAGCGCGGGGCTCGTGTCCGTCGGCCTCGCCAAGAACCTCCTG
CAGGTGTCGCCCCCGGGCACCAACGTGCTCATCGTCTCCACAGAGATCCTGTCGTCGCAG
TACTACGTCGGCACGGAGCGCGCCATGCTGCTGCCCAACTGCCTCTTCCGCATGGGCGCC
GCCGCCATGATCCTCTCCAACTCGCCCGACCACGCGCGGTTCCGCCTCGGCCGCGTGGTG
CGCACCGTCACCGCGGCGCGGGACAGCGACTACCGGTGCGTGTTCCAGGAGGAGGACGAG
CAGGGCAACACGGGGATCCGCCTCTCCAAGGACCTCGCCACCACCGCCGGCCACGCGCTC
AAGAGCAACATCGCCGCGTTCGGCCCGCTCGTCCTTCCGGCGTCCGAGCAGCTGCTGGTA
GCCATCTCCTTCCTCAAGCGGAAGCTCAAGCAGTTGAGCGGCCACGCGGGCAAGGTGAGG
CTGTACCGGCCCGACTTCCGCACGGCGTTCGAGCACTTCTGCATCCACGCGGGGGGCCGC
GGGGTGATCGACGAGGTGCAGCACGGGCTCGGTCTCTCCGACGACGACGTGGAGGCGTCG
CGGATGACGCTGCACCGGTTCGGGAACACGAGCTCCAGCTCGGTGCTGTACGAGCTGGCG
TACCTGGAGGCCAAGGGGAGGATGAAGAGAGGGGATCGGGTGTGGATGATCTCCTTCGGC
GCCGGCTTCGACTGCAACAGCGTGGCGTGGGAGTGCGTCAAGCCGGCGCCCGACGCCGAC
GGGCCCTGGGTCGACTGCATCCACCGCTACCCCGTCCAGCTCCCCGAAATCGCCTAA

Peptide Sequence

PEP ID

Os01t0529800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:19059236:19061167:1 gene:Os01g0529800 transcript:Os01t0529800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Very-long-chain fatty acid condensing enzyme CUT1. (Os01t0529800-01)
Sequence

MLLLKAVYRVVVNNFLALAAAAVAAVLLRRPDELAARLRAVSSPLHAATAAVLAAGVARL
VRARRARGVYLVEYGCFRPRPCYRAPFATCLEHAHLMPYLVDEESVAFAIRLLERSGLGD
ETCVPDAYHYMPPDRSLRASRDESELVIFSAVDDVFARSALTPADIDVLIVNCSIFTPTP
VFADMVVNRYKLRAEVQNVNLSGMGCSAGLVSVGLAKNLLQVSPPGTNVLIVSTEILSSQ
YYVGTERAMLLPNCLFRMGAAAMILSNSPDHARFRLGRVVRTVTAARDSDYRCVFQEEDE
QGNTGIRLSKDLATTAGHALKSNIAAFGPLVLPASEQLLVAISFLKRKLKQLSGHAGKVR
LYRPDFRTAFEHFCIHAGGRGVIDEVQHGLGLSDDDVEASRMTLHRFGNTSSSSVLYELA
YLEAKGRMKRGDRVWMISFGAGFDCNSVAWECVKPAPDADGPWVDCIHRYPVQLPEIA

Transcript Sequence

Transcript ID

Os01t0529800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:19059236:19061167:1 gene:Os01g0529800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Very-long-chain fatty acid condensing enzyme CUT1. (Os01t0529800-01)
Sequence

ACTCCCCCCCGCACCCACACTCGCGGCTACGTACGAACGTACGTACACAGTAGTAGTAGC
AGTAGTGCGTACACGATGCTGCTCCTCAAGGCCGTGTACCGCGTGGTGGTGAACAACTTC
CTCGCCCTCGCCGCGGCGGCCGTCGCGGCCGTGCTGCTCCGGCGCCCCGACGAGCTCGCC
GCGCGGCTGCGCGCGGTGTCGTCCCCGCTGCACGCCGCCACGGCGGCGGTGCTCGCGGCG
GGCGTGGCGAGGCTGGTGCGCGCGCGGCGGGCGCGGGGCGTGTACCTGGTGGAGTACGGG
TGCTTCCGCCCCAGGCCGTGCTACCGGGCCCCGTTCGCGACGTGCCTGGAGCACGCCCAC
CTGATGCCGTACCTGGTGGACGAGGAGAGCGTCGCGTTCGCCATCCGGCTGCTGGAGCGG
TCGGGGCTCGGCGACGAGACGTGCGTCCCCGACGCGTACCACTACATGCCGCCCGACCGG
AGCCTCAGGGCGTCGCGCGACGAGTCGGAGCTGGTCATCTTCTCCGCCGTCGACGACGTG
TTCGCCAGGTCGGCCCTGACGCCCGCCGACATCGACGTGCTCATCGTCAACTGCAGCATC
TTCACCCCGACGCCCGTGTTCGCCGACATGGTCGTCAACAGGTACAAGCTCCGCGCCGAG
GTGCAGAACGTGAACCTGTCCGGGATGGGGTGCAGCGCGGGGCTCGTGTCCGTCGGCCTC
GCCAAGAACCTCCTGCAGGTGTCGCCCCCGGGCACCAACGTGCTCATCGTCTCCACAGAG
ATCCTGTCGTCGCAGTACTACGTCGGCACGGAGCGCGCCATGCTGCTGCCCAACTGCCTC
TTCCGCATGGGCGCCGCCGCCATGATCCTCTCCAACTCGCCCGACCACGCGCGGTTCCGC
CTCGGCCGCGTGGTGCGCACCGTCACCGCGGCGCGGGACAGCGACTACCGGTGCGTGTTC
CAGGAGGAGGACGAGCAGGGCAACACGGGGATCCGCCTCTCCAAGGACCTCGCCACCACC
GCCGGCCACGCGCTCAAGAGCAACATCGCCGCGTTCGGCCCGCTCGTCCTTCCGGCGTCC
GAGCAGCTGCTGGTAGCCATCTCCTTCCTCAAGCGGAAGCTCAAGCAGTTGAGCGGCCAC
GCGGGCAAGGTGAGGCTGTACCGGCCCGACTTCCGCACGGCGTTCGAGCACTTCTGCATC
CACGCGGGGGGCCGCGGGGTGATCGACGAGGTGCAGCACGGGCTCGGTCTCTCCGACGAC
GACGTGGAGGCGTCGCGGATGACGCTGCACCGGTTCGGGAACACGAGCTCCAGCTCGGTG
CTGTACGAGCTGGCGTACCTGGAGGCCAAGGGGAGGATGAAGAGAGGGGATCGGGTGTGG
ATGATCTCCTTCGGCGCCGGCTTCGACTGCAACAGCGTGGCGTGGGAGTGCGTCAAGCCG
GCGCCCGACGCCGACGGGCCCTGGGTCGACTGCATCCACCGCTACCCCGTCCAGCTCCCC
GAAATCGCCTAAGACGTCTAAAAATGATCGATAAACGACGTACAACGACCCTACATACTA
TCTCGCAGCGATCATTAATTAAATTGGGATTTAATTGCATGCATGCACGTAATTAAGCGC
GTACATATATATGCACGTATATATGTATATGTACCTTAATTCGGCGAAGTATATGTGGCA
TACATATATACTCGGTATTTTGTTACTACATGGGATATATTGTGATTCGCATAGGGGACA
TACAGTACACTTTCTTCTTCAAAGATATAGTAGAACGAATAATTGAGAACTTTGATACCG
CAGTTAAGCTAGTATACAGACCTTGATTAGTGGTTTGAATTATATTGATAAGTGTTGTTA
GAGGTTGGGAACAATGTTTGATTGTTGTATTGTGCCCTCAGATGGGCAAAAGTATTAAAT
TAAAGTCGTTGC