Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0527600-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:18940502:18945666:-1 gene:Os01g0527600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHOOTLESS 2 description:RNA-dependent RNA polymerase, Small RNA biogenesis, Regulation of shoot apical meristem (SAM) initiation, Spikelet development (Os01t0527600-01)
Sequence	ATGCGATCGCCGCGCGGCGGGGCGGCCGCGCAGCCGTCGGGGCGGCGCGGCGACACGACG GCGGCGGCGGCGGGCGATCTGGTGACGACGCAGGTCAGCCTTGGCGGCTTCGACGCCGGC GTCGCCGCGGGGGACCTCGCCGACTTCCTGGAGCACGAGGTCGGCCTGGTCTGGCGCTGC CGCGTCAAGACCTCCTGGACGCCGCCGGACTCCTACCCGGACTTCGCCCTCCCCACCGCC CCCGCCTCCGCCTCGGCCGCGGCCGCGCCGCCGCGGTACGACCGGGTGCCCCCGCACGCG TTTGTCCACTTCGCGCGCCCGGAGGGGGCGCGCCGCGCCGCGGACCTCGCGGGGGAGACC AGGCTCATCCTGAGGGGGAAGCCCCTGCGCGTCGCGTCCGCGCCGGACAGCTCGCTCCGC GTGTCCCGCCGCAGCAGCATCGCGCCGTTCCGGTTCCCCGACGTGCGCCTCGAGGTCGGG GCGCTCCCGTCGCCCGGCGCGTTCCTCGCCGCCTGGCGCGGGCCGGACGCCGGGCTCGAC CTCTCCGTCGACCCCTTCGACGGGTGCTGCCGCCTCGTGTTCACCCGCGACACCGCCTTC ACGTTCCCGGGCTTCCGCGAGGTCGCCGCCATACGCTGCGACGTCAAGCTGGAGTTCCCC GTGCGCGACGTCCTGGAGGTCCGCCTGTACCGCCTCGACTGCTCGCTGCTCCTCCGCCTC GCCGCCGCGCCGCTGGTGCACTACCGCACCGCCGACGACGACTTCCACGAGCCGGTCCCC TTCGACCTGCTCGACGACGACGACCCGTGGATACGGACCACGGACATCACCCCGAGCGGC GCCATCGGGCGGTGCGGGGTGTACAGGATCTCCTTCTCGGCGCGATTCTGGCCCAAGATG GACCGCGCGCTGGACTACATGAGGGAGAGGAGGGTGGCGATCGTCGATTGCGGCGGCGGA TGGGGGCCGCGGCGGGGGCTCACAGTGCGCGACGAGCTGGAGTTCGGGGAGCCAATGCAG GACGTCTTCTTCTGCCTGCAGCACGCCGAGGGGCTCAAGTTCCCGCTCCTCTTCATGGTG AACGCGTTGGTGCACAAGGGAATCATCAACCAGCACCAGCTCACGCCTGAATTCTTCAGC CTGCTGGGGAGAAGCGAGGAGAACGTCAATGTGGCTGCATTGAGGGATTTCTGGGGGGAC AAGTTCCCAGTGTTTGATGCGTGCGGGAGGCTGAAGAAGGCACTGAATCGGGTGGCCAGG AACCCCAAACTTCTCTGCAGCAAGGTCGGGGATGACCACGCGGAGGTGCGGAGGCTGGTG ATCACGCCCACCAGGGCTTATTGTCTGCCTCCAGAAGTGGAGCGCTCAAACCGTGTTCTT CGGCATTACCATGAGGTGGCTGACAGGTTTTTGAGGGTCACTTTTATGGACGAGGGTATG CAGGTGCTGAACAACAATGTGCTCAACTCCTTCACTGCACCAATTGTCAAAGACTTGATG TCGAATTTTTTCCAGCAGAAGACAACGGTGTACAAGCGTGTCAGGATGTTGTTGACGGAG GGTTTCCACATGTGTGGAAGGAAGTACTCATTTCTCGCATTCTCATCGAACCAGTTAAGG GACAAGTCAGCTTGGTTCTTTGCCGAGGACAGAAAGACAACGGTGGAAGCAATTAGGAAG TGGATGGGACGGTTCACAAGTAAGAATGTTGCGAAGCATGCTGCTCGAATGGGGCAGTGC TTCTCATCCACATATGCAACTGTGACAATGCGGCCGGATGAGGTTGATGAGAGTTTTGAT GATGTTGTGCATAATGAGTACATTTTCTCCGATGGAATTGGCAAAATTACCCCAGATCTT GCATTGGAAGTTGCCGAGAGGCTGCAGCTGACAGATAACCCGCCATCTGCTTATCAGATC AGGTTTGCTGGCTTCAAGGGTGTCATAGCTGTCTGGCAAGGACATGGTGATGGGACACGG CTTTTCCTGAGGCCAAGCATGAGGAAGTTTGAGTCTAACCATTTGGTGTTAGAGGTGGTC TCCTGGACAAAGTTCCAGCCAGGATTCTTAAATCGACAGATTATAATATTGCTATCCTCA CTGAATGTCCCAGATTCTATCTTTTGGCAAATGCAAGAGACCATGCTTTCTAACCTCAAC AATATTCTATCAGACAGAGATGTTGCTTTTGAGGTTTTAACAACTTCATGTGCTGATGAT GGAAACACTGCAGCATTGATGCTCAGTGCTGGCTTTGAACCTAGAACTGAACCACACTTG AAAGCAATGCTCTTGGCTATAAGGTCTGCACAATTGCAGGATCTTTTGGAAAAAGCAAGG ATATTTGTGCCAAAGGGAAGGTGGTTGATGGGCTGTCTTGATGAGCTTGGGGTTCTTGAG CAAGGGCAGTGCTTTATTCGGGCAACAGTTCCATCATTGAATAGTTATTTTGTTAAGCAT GGGTCAAGATTTTCATCAACAGATAAAAACACAGAGGTCATTTTGGGTACTGTGGTAATA GCAAAGAATCCCTGTCTTCATCCAGGGGATGTCCGCATCCTTGAAGCAGTTGATGTGCCC GAACTGCATCATCTGGTTGATTGTTTGGTGTTCCCCCAGAAAGGTGAGAGGCCACATGCT AACGAGGCATCTGGGAGCGATCTTGATGGGGATCTCTACTTTGTGACATGGGATGAGAAA CTTATACCTCCAGGCAAGAAGAGCTGGAACCCTATGGACTACTCCCCACCTGAAGCAAAA CAACTTCCGCGCCAAGTATCTCAACATGATATCATTGATTTCTTCTTAAAGAACATGATA AGTGAGAATCTTGGTAGGATCTGTAATGCTCATGTTGTTCATGCTGATCTTAGCGAGTAT GGTGCAATGGATGAGAAGTGTATTCACTTAGCTGAGCTAGCAGCAACTGCCGTGGACTTC CCCAAGACTGGCAAACTTGCGATAATGCCACCACACCTTAAACCAAAAGTCTACCCTGAC TTCATGGGAAAGGAAGATGGACAATCTTATAAATCAGAAAAGATTCTTGGAAGGCTTTAT CGTTCAATCCAAGAGGCCTCCAATGGTGATGTGGTGTCACAAGAGGTTTGCACTCCAAAT GATCTGCCTTATGACATAGATCTGGAAGTTCCTGGTGCATCAGATTTCCTCGCGAGTGCT TGGCAATGCAAGTGTTCATACGACGCGCAGCTGAGTGCGCTGCTCAGTCAGTACAGGGTC CGCACTGAAGCTGAACTTGTGACAGGGCACATAACGTTCCTTGTTAAGAACAGCAGCAAG AAGCAAGGCGACATAAAGGACAGGCTGAAGACTGCTTACTCTGCACTACGCAAGGAGTTC AAAAGTACCTTTGAGAGCATAGCATCGGATCAATGCGAGATTGGTGATGACGAGAAGAAT CTGCTGTACGAGATGAAGGCCTCTGCCTGGTACCAGGTGACCTATCACCCCAAATGGGTG GAGAAGTCGAGGGGCATTCTGGGCCCAGATGGTGAGGAAATACCGGCAAGCCTTAGCTTT GCATGGATCCCGGTGGATTACTTGGCGCGGATAAAGCTAAGGTGCCATGGTAAAGTGAGA GTTGAAGGCCAAAAGCCTGTTGAAAGGCTTGCAGCATACATCTCCGAGAGGATATGA

Peptide Sequence

PEP ID	Os01t0527600-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:18940502:18945666:-1 gene:Os01g0527600 transcript:Os01t0527600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHOOTLESS 2 description:RNA-dependent RNA polymerase, Small RNA biogenesis, Regulation of shoot apical meristem (SAM) initiation, Spikelet development (Os01t0527600-01)
Sequence	MRSPRGGAAAQPSGRRGDTTAAAAGDLVTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRC RVKTSWTPPDSYPDFALPTAPASASAAAAPPRYDRVPPHAFVHFARPEGARRAADLAGET RLILRGKPLRVASAPDSSLRVSRRSSIAPFRFPDVRLEVGALPSPGAFLAAWRGPDAGLD LSVDPFDGCCRLVFTRDTAFTFPGFREVAAIRCDVKLEFPVRDVLEVRLYRLDCSLLLRL AAAPLVHYRTADDDFHEPVPFDLLDDDDPWIRTTDITPSGAIGRCGVYRISFSARFWPKM DRALDYMRERRVAIVDCGGGWGPRRGLTVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMV NALVHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPVFDACGRLKKALNRVAR NPKLLCSKVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGM QVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLR DKSAWFFAEDRKTTVEAIRKWMGRFTSKNVAKHAARMGQCFSSTYATVTMRPDEVDESFD DVVHNEYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTR LFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLN NILSDRDVAFEVLTTSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKAR IFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVI AKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEK LIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEY GAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLY RSIQEASNGDVVSQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRV RTEAELVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKN LLYEMKASAWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVR VEGQKPVERLAAYISERI

Transcript Sequence

Transcript ID	Os01t0527600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:18940502:18945666:-1 gene:Os01g0527600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHOOTLESS 2 description:RNA-dependent RNA polymerase, Small RNA biogenesis, Regulation of shoot apical meristem (SAM) initiation, Spikelet development (Os01t0527600-01)
Sequence	TCTTCGTTGGTGTCCCCTCGCTTAAACCCCTCCGAAATTTATTTACTCATCAAAAATTTA ATAACCGAATCCGATTGATCTTCCCCTCTCTCTCTCTCTCTCACTCCTCCCAGCTCCCAC CCAACCACCCAAGCCATGCGATCGCCGCGCGGCGGGGCGGCCGCGCAGCCGTCGGGGCGG CGCGGCGACACGACGGCGGCGGCGGCGGGCGATCTGGTGACGACGCAGGTCAGCCTTGGC GGCTTCGACGCCGGCGTCGCCGCGGGGGACCTCGCCGACTTCCTGGAGCACGAGGTCGGC CTGGTCTGGCGCTGCCGCGTCAAGACCTCCTGGACGCCGCCGGACTCCTACCCGGACTTC GCCCTCCCCACCGCCCCCGCCTCCGCCTCGGCCGCGGCCGCGCCGCCGCGGTACGACCGG GTGCCCCCGCACGCGTTTGTCCACTTCGCGCGCCCGGAGGGGGCGCGCCGCGCCGCGGAC CTCGCGGGGGAGACCAGGCTCATCCTGAGGGGGAAGCCCCTGCGCGTCGCGTCCGCGCCG GACAGCTCGCTCCGCGTGTCCCGCCGCAGCAGCATCGCGCCGTTCCGGTTCCCCGACGTG CGCCTCGAGGTCGGGGCGCTCCCGTCGCCCGGCGCGTTCCTCGCCGCCTGGCGCGGGCCG GACGCCGGGCTCGACCTCTCCGTCGACCCCTTCGACGGGTGCTGCCGCCTCGTGTTCACC CGCGACACCGCCTTCACGTTCCCGGGCTTCCGCGAGGTCGCCGCCATACGCTGCGACGTC AAGCTGGAGTTCCCCGTGCGCGACGTCCTGGAGGTCCGCCTGTACCGCCTCGACTGCTCG CTGCTCCTCCGCCTCGCCGCCGCGCCGCTGGTGCACTACCGCACCGCCGACGACGACTTC CACGAGCCGGTCCCCTTCGACCTGCTCGACGACGACGACCCGTGGATACGGACCACGGAC ATCACCCCGAGCGGCGCCATCGGGCGGTGCGGGGTGTACAGGATCTCCTTCTCGGCGCGA TTCTGGCCCAAGATGGACCGCGCGCTGGACTACATGAGGGAGAGGAGGGTGGCGATCGTC GATTGCGGCGGCGGATGGGGGCCGCGGCGGGGGCTCACAGTGCGCGACGAGCTGGAGTTC GGGGAGCCAATGCAGGACGTCTTCTTCTGCCTGCAGCACGCCGAGGGGCTCAAGTTCCCG CTCCTCTTCATGGTGAACGCGTTGGTGCACAAGGGAATCATCAACCAGCACCAGCTCACG CCTGAATTCTTCAGCCTGCTGGGGAGAAGCGAGGAGAACGTCAATGTGGCTGCATTGAGG GATTTCTGGGGGGACAAGTTCCCAGTGTTTGATGCGTGCGGGAGGCTGAAGAAGGCACTG AATCGGGTGGCCAGGAACCCCAAACTTCTCTGCAGCAAGGTCGGGGATGACCACGCGGAG GTGCGGAGGCTGGTGATCACGCCCACCAGGGCTTATTGTCTGCCTCCAGAAGTGGAGCGC TCAAACCGTGTTCTTCGGCATTACCATGAGGTGGCTGACAGGTTTTTGAGGGTCACTTTT ATGGACGAGGGTATGCAGGTGCTGAACAACAATGTGCTCAACTCCTTCACTGCACCAATT GTCAAAGACTTGATGTCGAATTTTTTCCAGCAGAAGACAACGGTGTACAAGCGTGTCAGG ATGTTGTTGACGGAGGGTTTCCACATGTGTGGAAGGAAGTACTCATTTCTCGCATTCTCA TCGAACCAGTTAAGGGACAAGTCAGCTTGGTTCTTTGCCGAGGACAGAAAGACAACGGTG GAAGCAATTAGGAAGTGGATGGGACGGTTCACAAGTAAGAATGTTGCGAAGCATGCTGCT CGAATGGGGCAGTGCTTCTCATCCACATATGCAACTGTGACAATGCGGCCGGATGAGGTT GATGAGAGTTTTGATGATGTTGTGCATAATGAGTACATTTTCTCCGATGGAATTGGCAAA ATTACCCCAGATCTTGCATTGGAAGTTGCCGAGAGGCTGCAGCTGACAGATAACCCGCCA TCTGCTTATCAGATCAGGTTTGCTGGCTTCAAGGGTGTCATAGCTGTCTGGCAAGGACAT GGTGATGGGACACGGCTTTTCCTGAGGCCAAGCATGAGGAAGTTTGAGTCTAACCATTTG GTGTTAGAGGTGGTCTCCTGGACAAAGTTCCAGCCAGGATTCTTAAATCGACAGATTATA ATATTGCTATCCTCACTGAATGTCCCAGATTCTATCTTTTGGCAAATGCAAGAGACCATG CTTTCTAACCTCAACAATATTCTATCAGACAGAGATGTTGCTTTTGAGGTTTTAACAACT TCATGTGCTGATGATGGAAACACTGCAGCATTGATGCTCAGTGCTGGCTTTGAACCTAGA ACTGAACCACACTTGAAAGCAATGCTCTTGGCTATAAGGTCTGCACAATTGCAGGATCTT TTGGAAAAAGCAAGGATATTTGTGCCAAAGGGAAGGTGGTTGATGGGCTGTCTTGATGAG CTTGGGGTTCTTGAGCAAGGGCAGTGCTTTATTCGGGCAACAGTTCCATCATTGAATAGT TATTTTGTTAAGCATGGGTCAAGATTTTCATCAACAGATAAAAACACAGAGGTCATTTTG GGTACTGTGGTAATAGCAAAGAATCCCTGTCTTCATCCAGGGGATGTCCGCATCCTTGAA GCAGTTGATGTGCCCGAACTGCATCATCTGGTTGATTGTTTGGTGTTCCCCCAGAAAGGT GAGAGGCCACATGCTAACGAGGCATCTGGGAGCGATCTTGATGGGGATCTCTACTTTGTG ACATGGGATGAGAAACTTATACCTCCAGGCAAGAAGAGCTGGAACCCTATGGACTACTCC CCACCTGAAGCAAAACAACTTCCGCGCCAAGTATCTCAACATGATATCATTGATTTCTTC TTAAAGAACATGATAAGTGAGAATCTTGGTAGGATCTGTAATGCTCATGTTGTTCATGCT GATCTTAGCGAGTATGGTGCAATGGATGAGAAGTGTATTCACTTAGCTGAGCTAGCAGCA ACTGCCGTGGACTTCCCCAAGACTGGCAAACTTGCGATAATGCCACCACACCTTAAACCA AAAGTCTACCCTGACTTCATGGGAAAGGAAGATGGACAATCTTATAAATCAGAAAAGATT CTTGGAAGGCTTTATCGTTCAATCCAAGAGGCCTCCAATGGTGATGTGGTGTCACAAGAG GTTTGCACTCCAAATGATCTGCCTTATGACATAGATCTGGAAGTTCCTGGTGCATCAGAT TTCCTCGCGAGTGCTTGGCAATGCAAGTGTTCATACGACGCGCAGCTGAGTGCGCTGCTC AGTCAGTACAGGGTCCGCACTGAAGCTGAACTTGTGACAGGGCACATAACGTTCCTTGTT AAGAACAGCAGCAAGAAGCAAGGCGACATAAAGGACAGGCTGAAGACTGCTTACTCTGCA CTACGCAAGGAGTTCAAAAGTACCTTTGAGAGCATAGCATCGGATCAATGCGAGATTGGT GATGACGAGAAGAATCTGCTGTACGAGATGAAGGCCTCTGCCTGGTACCAGGTGACCTAT CACCCCAAATGGGTGGAGAAGTCGAGGGGCATTCTGGGCCCAGATGGTGAGGAAATACCG GCAAGCCTTAGCTTTGCATGGATCCCGGTGGATTACTTGGCGCGGATAAAGCTAAGGTGC CATGGTAAAGTGAGAGTTGAAGGCCAAAAGCCTGTTGAAAGGCTTGCAGCATACATCTCC GAGAGGATATGATGAAACAATGCAAAGGTCGCAGTAAGACCACTCTGCCATTCGTAATGC CGGTTCAAAGGGCATGCGTACAAAATATCTGAGTTTTTTTTTCTTTTCATTTTTGTTCAC TTCACTGAACTTGATCTCCCGAATGTTTCAGT