Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0518500-02
CDS Infomation	cds chromosome:IRGSP-1.0:1:18394242:18401664:-1 gene:Os01g0518500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 27 protein. (Os01t0518500-01);Glycoside hydrolase, family 27 protein. (Os01t0518500-02)
Sequence	ATGGGAAGGGGAGCCCCATCCTCCCATCCGCCGCCATGGCGCCGCCTCCTCCGCTACGCC CTCCTCTGCGCCCTCCTCCCCCCCTGGGGCACTTCCGAGGCTAATGAACAACTTGCTGAG TTTCCACCAAGAGGCTGGAATTCCTATGATTCCTTTTCATGGATAGTTGATGAAAATACA TACATGCAAAATGCGGAGATCTTGGCAGAAAAATTGCTCCCACATGGATATGAGTTTGCA GTTATTGATTACCTCTGGTACCGAAAGTATGTTCATGGGGCATACACAGATTCATATGGA TTTGATAACATTGATGAGTGGGGTCGGCCATTTCCTGATCTTCAAAGATTTCCATCATCC AGAATTGATAAAGGGTTCAGTCAACTTGCGAACAAGGTGCATGGAATGGGCTTGAAATTC GGAATCCATTTAATGAAAGGGATAAGTTTACAGGCTGTGAATGGAAACACACCCATATTG GACATTAAAACGGGAAAACCCTACGTAGAGGATGGCCGGCAATGGACAGCTCGTGATATA GGTCTTACACATAGAACATGTGCATGGATGCCACATGGATTTATGAGTGTAAATACTGAT ATTGGAGCTGGAAAGGCCTTCCTAAGATCTCTTTATCAACAGTACGCTGATTGGGGTGTT GATTTTGTGAAGGTTGATTGTATCTTCGGTACGGATTACAGCCCAAAAGAAATCATAACT ATTTCAGAGCTCTTGGCAGAGCTTGACCGCCCCATCATCCTGTCCATCTCACCAGGAACC GAAGTGACTCCAGCATTAGCCAAAAACATCAGTCAACATGTTAACATGTACAGGATAACA GGGGATGATTGGGACAACTGGAAGGATGTTAGTTCACATTTTGACGTGTCTAGTTCCTTT GCTGCTGCAAATAAAATTGGGGCCATAGGATTACGAGGAAGATCTTGGCCAGATTTAGAC ATGCTCCCATTTGGCTGGCTTACAAATGCAGGTGTCAATCAGGGTCCACATAGGCAATGT GAACTTACATCTGATGAACAGAGAACACAGATAGCACTTTGGTCAATGGCTAAGTCTCCT CTAATGTATGGAGGAGATTTGAGGCATCTCGACAATGACACGTTAAGCATAATAACAAAT CCTACATTACTGAAAATAAATCACTACAGCATAAATAATATGGAGTTCCATCATGTGCAC AGTGAAAGGACTTCCAAAGAAGACAAGCATTCTAGTCGTTTCATATCCGAAGATCTTGTA CACGTACCAAAGATTGATGGTGTATCTCTTGGTCTCACTGCCTGCAGTGATGACAAAGCA AATGGATGGTATATGTTTTCACAACATGGTAAATCAGATCATATATGCAGGAACTATGGG ATGCAGGATGACAAAAATATCTCATTTTGCCTGGGCAAAACAATTCCTCTCCTGACATCG GATGATATAATCGTACATAATGAAGAATACCAAACAAAGTTTCACCTGGCAAATATGGAC AGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGGAGGACATCCTCAGATAGCAAG TTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGATGTGGGAGCTGAATGAGAAA GGAAACCTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATAAAGGA GTTGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGGAGAAATA TACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAACCGCGAGAATATCAGAC CTGGAAAAGGTTCTCGGGAGTACATTCATAAGAAAAGACACGTGCAGCTGCACTGAAGTT TGGAGCGGGAGGAATTTCGGTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAAATCACAT GGTTCCATGGTGTTTGAAATTACATGTTGA

Peptide Sequence

PEP ID	Os01t0518500-02
PEP Infomation	pep chromosome:IRGSP-1.0:1:18394242:18401664:-1 gene:Os01g0518500 transcript:Os01t0518500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 27 protein. (Os01t0518500-01);Glycoside hydrolase, family 27 protein. (Os01t0518500-02)
Sequence	MGRGAPSSHPPPWRRLLRYALLCALLPPWGTSEANEQLAEFPPRGWNSYDSFSWIVDENT YMQNAEILAEKLLPHGYEFAVIDYLWYRKYVHGAYTDSYGFDNIDEWGRPFPDLQRFPSS RIDKGFSQLANKVHGMGLKFGIHLMKGISLQAVNGNTPILDIKTGKPYVEDGRQWTARDI GLTHRTCAWMPHGFMSVNTDIGAGKAFLRSLYQQYADWGVDFVKVDCIFGTDYSPKEIIT ISELLAELDRPIILSISPGTEVTPALAKNISQHVNMYRITGDDWDNWKDVSSHFDVSSSF AAANKIGAIGLRGRSWPDLDMLPFGWLTNAGVNQGPHRQCELTSDEQRTQIALWSMAKSP LMYGGDLRHLDNDTLSIITNPTLLKINHYSINNMEFHHVHSERTSKEDKHSSRFISEDLV HVPKIDGVSLGLTACSDDKANGWYMFSQHGKSDHICRNYGMQDDKNISFCLGKTIPLLTS DDIIVHNEEYQTKFHLANMDSDDACLDASGSQRRTSSDSKFPMFSRCRWHAMQMWELNEK GNLISSYSRLCATVESNNKGVVTTGAVARAWIATGSKGEIYLAFFNLDSMSRKITARISD LEKVLGSTFIRKDTCSCTEVWSGRNFGRVEEEISAVVKSHGSMVFEITC

Transcript Sequence

Transcript ID	Os01t0518500-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:18394242:18401664:-1 gene:Os01g0518500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 27 protein. (Os01t0518500-01);Glycoside hydrolase, family 27 protein. (Os01t0518500-02)
Sequence	CGCACTCACGAGCCGCGGCTTCACTCACCACTCCCCAGTCGCCACGCCTCGGCCCGACGG GATGGGAAGGGGAGCCCCATCCTCCCATCCGCCGCCATGGCGCCGCCTCCTCCGCTACGC CCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCACTTCCGAGGCTAATGAACAACTTGCTGA GTTTCCACCAAGAGGCTGGAATTCCTATGATTCCTTTTCATGGATAGTTGATGAAAATAC ATACATGCAAAATGCGGAGATCTTGGCAGAAAAATTGCTCCCACATGGATATGAGTTTGC AGTTATTGATTACCTCTGGTACCGAAAGTATGTTCATGGGGCATACACAGATTCATATGG ATTTGATAACATTGATGAGTGGGGTCGGCCATTTCCTGATCTTCAAAGATTTCCATCATC CAGAATTGATAAAGGGTTCAGTCAACTTGCGAACAAGGTGCATGGAATGGGCTTGAAATT CGGAATCCATTTAATGAAAGGGATAAGTTTACAGGCTGTGAATGGAAACACACCCATATT GGACATTAAAACGGGAAAACCCTACGTAGAGGATGGCCGGCAATGGACAGCTCGTGATAT AGGTCTTACACATAGAACATGTGCATGGATGCCACATGGATTTATGAGTGTAAATACTGA TATTGGAGCTGGAAAGGCCTTCCTAAGATCTCTTTATCAACAGTACGCTGATTGGGGTGT TGATTTTGTGAAGGTTGATTGTATCTTCGGTACGGATTACAGCCCAAAAGAAATCATAAC TATTTCAGAGCTCTTGGCAGAGCTTGACCGCCCCATCATCCTGTCCATCTCACCAGGAAC CGAAGTGACTCCAGCATTAGCCAAAAACATCAGTCAACATGTTAACATGTACAGGATAAC AGGGGATGATTGGGACAACTGGAAGGATGTTAGTTCACATTTTGACGTGTCTAGTTCCTT TGCTGCTGCAAATAAAATTGGGGCCATAGGATTACGAGGAAGATCTTGGCCAGATTTAGA CATGCTCCCATTTGGCTGGCTTACAAATGCAGGTGTCAATCAGGGTCCACATAGGCAATG TGAACTTACATCTGATGAACAGAGAACACAGATAGCACTTTGGTCAATGGCTAAGTCTCC TCTAATGTATGGAGGAGATTTGAGGCATCTCGACAATGACACGTTAAGCATAATAACAAA TCCTACATTACTGAAAATAAATCACTACAGCATAAATAATATGGAGTTCCATCATGTGCA CAGTGAAAGGACTTCCAAAGAAGACAAGCATTCTAGTCGTTTCATATCCGAAGATCTTGT ACACGTACCAAAGATTGATGGTGTATCTCTTGGTCTCACTGCCTGCAGTGATGACAAAGC AAATGGATGGTATATGTTTTCACAACATGGTAAATCAGATCATATATGCAGGAACTATGG GATGCAGGATGACAAAAATATCTCATTTTGCCTGGGCAAAACAATTCCTCTCCTGACATC GGATGATATAATCGTACATAATGAAGAATACCAAACAAAGTTTCACCTGGCAAATATGGA CAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGGAGGACATCCTCAGATAGCAA GTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGATGTGGGAGCTGAATGAGAA AGGAAACCTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATAAAGG AGTTGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGGAGAAAT ATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAACCGCGAGAATATCAGA CCTGGAAAAGGTTCTCGGGAGTACATTCATAAGAAAAGACACGTGCAGCTGCACTGAAGT TTGGAGCGGGAGGAATTTCGGTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAAATCACA TGGTTCCATGGTGTTTGAAATTACATGTTGAGGTATCCCATAATTCTCCTATTGCGCTTA CTGAAGCATGACAGGATGGAATAGATAAGTAGGGAAAAGAGCCTTGAGCATGTATCAGGT AAAGCTACCAAAATGAACATCCTTTAAAAGGCTGGGGTTTCAGTTTAAAATCTGGGGGTT GTGGGCTTTAAATGAGGCCTAAAAGAACAAAAAAAATTCCGGAATACGGAGCTATATATG CAACACCACTCACTAATGAAGGAACCAAATGCGAAGTTATGTAAC