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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0518000-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:18374765:18376668:-1 gene:Os01g0518000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF597 family protein. (Os01t0518000-01)
Sequence

ATGAAAGGAGGAGAGTCGGTGCCTTCATGGGTAGAACTACTGCTCTCGACGCAGTTTTTT
ACTACTTGCAGTAGCCATCTCATCTCTCCTCGTAACGAATGCAACTTCTTTTGCATCGAT
TGCCAGACACCACAAGCATCCTTTTGCTATTACTGTCGTTTAAGTCATCATTCCTCTCAT
CATGTAATCCAGATCAGACGGTCGTCATACCATGATGTGGTGAAAGTTTCTGAGTTGGAG
GATATCCTTGACATAAGTGATGTACAAACTTATGTGATCAACAGCTCAAGGGTTGTGTAT
TTGACTGAGCGTCCTCAACTACGGAGTTGTGGTGTTTCAAATACAAAGTTATCATCATCA
CAAACTTATAAATGTGAGATTTGCAGCCGTACTCTTCTTGATGATTTCCGGTTCTGCTCT
CTTGGTTGCAATTTCGCAGCCATAAAAAGAGACAATGAGAAGAATGTGGCTCAAAATGGT
ATTGCCTCCAATGCAAATGAAGTTAAGATTGGCACCAACAATGGCAGCACAAATGCTGGA
AGTGCCAATGAGATATCTAGTGATGCTAATAACTACCGCAATGAAATACCTTCATCAACA
AGAGTTATTCGTCACCGTCGGAAGGGGATTCCTCGCCGTGCACCATTTTTCTGA

Peptide Sequence

PEP ID

Os01t0518000-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:18374765:18376668:-1 gene:Os01g0518000 transcript:Os01t0518000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF597 family protein. (Os01t0518000-01)
Sequence

MKGGESVPSWVELLLSTQFFTTCSSHLISPRNECNFFCIDCQTPQASFCYYCRLSHHSSH
HVIQIRRSSYHDVVKVSELEDILDISDVQTYVINSSRVVYLTERPQLRSCGVSNTKLSSS
QTYKCEICSRTLLDDFRFCSLGCNFAAIKRDNEKNVAQNGIASNANEVKIGTNNGSTNAG
SANEISSDANNYRNEIPSSTRVIRHRRKGIPRRAPFF

Transcript Sequence

Transcript ID

Os01t0518000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:18374765:18376668:-1 gene:Os01g0518000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF597 family protein. (Os01t0518000-01)
Sequence

ACTAGAACTTAGCCTAAGATCAAAGCTTCCTATTATAATTTGCAATGAAAGGAGGAGAGT
CGGTGCCTTCATGGGTAGAACTACTGCTCTCGACGCAGTTTTTTACTACTTGCAGTAGCC
ATCTCATCTCTCCTCGTAACGAATGCAACTTCTTTTGCATCGATTGCCAGACACCACAAG
CATCCTTTTGCTATTACTGTCGTTTAAGTCATCATTCCTCTCATCATGTAATCCAGATCA
GACGGTCGTCATACCATGATGTGGTGAAAGTTTCTGAGTTGGAGGATATCCTTGACATAA
GTGATGTACAAACTTATGTGATCAACAGCTCAAGGGTTGTGTATTTGACTGAGCGTCCTC
AACTACGGAGTTGTGGTGTTTCAAATACAAAGTTATCATCATCACAAACTTATAAATGTG
AGATTTGCAGCCGTACTCTTCTTGATGATTTCCGGTTCTGCTCTCTTGGTTGCAATTTCG
CAGCCATAAAAAGAGACAATGAGAAGAATGTGGCTCAAAATGGTATTGCCTCCAATGCAA
ATGAAGTTAAGATTGGCACCAACAATGGCAGCACAAATGCTGGAAGTGCCAATGAGATAT
CTAGTGATGCTAATAACTACCGCAATGAAATACCTTCATCAACAAGAGTTATTCGTCACC
GTCGGAAGGGGATTCCTCGCCGTGCACCATTTTTCTGAAGAAAAGGCCTCAATTGACGTT
GCCGAAGAAATCAATAAATGGACATGTAGCAAGGGTGGTTGTCATTGTGTGTCTTCCATT
TTTTTTATCGTATTCCATATCTGTTGTGCTTTTCTGTGTGAATTTTAATGCTTTCAACAG
TTGTTGCTTTTGTTGTGGGAATAAACATTGTGGCATGAGTAAAAGGATTTCAGTTC