Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0517500-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:18352836:18354506:-1 gene:Os01g0517500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Polygalacturonase (Fragment). (Os01t0517500-01)
Sequence	ATGGCTGTGACGATGGACAACGTCATCAGGTTCATGTTCATCCTTAGCGTCGTCTACGGC GCCGCATATGCCAAAAAGTCTGAGGCCAAGGTCGCTAGTGCTCCTGGCCTAGCAGCGGCG GTCAACACGGTCTTCGACATCACCGAGCTCGGCGCCGTCGCTGACGGCAAGACAGATAGC ACCAAGGCGGTCCAGGATGCATGGGACGCGGCGTGCGGGTTGGCCGGGTCACAGAAGGTG GTGATCCCCAAGGGAGAATTCATGACCGGGCCCCTCAACTTCAGCGGGCCGTGCAAGGGC TACGTCACCGTCCAGATCGATGGCACCATGTTTGGCTCCAACGACATCCCCAAGTACAAC AAGGGCAACTGGATCGAGATCCTCCACATCGACAACGTCCTCGTCAACGGCTCCGGCACC CTCGACGGCCAGGGCGCCGCCGTCTGGAAAGACGAATGCAAGATCTTGCCCAACACGTTG GTGCTGGACTACGTGAAGAACGGGACCGTGTCGGGGCTCAAGCTGGTGAACGCCAAGTTC TTCCACATCAACGTGTACATGTCCAAGGGTGTGACGATCAAGAACGTGACCATCACCGCG GTGGCGAACAGCCCGAACACGGACGGTGTCCACATCGGCGACTCGTCGGAGATCAGCGTG TCGGACGCGACCATCGCGACGGGGGACGACTGCATCTCCGTGGGGCCGGGGAGCTCGCGG ATCAGCATCCAGGGGATCACCTGTGGGCCCGGGCAGGGGATCAGCGTGGGGTGCCTGGGC AGGTTCAAGGACGAGAAGGACGTGACGGACGTGACGGTCCGCGACTGCGTGCTCCGCAAC ACCTCCAACGGCGTCCGGATCAAGTCGTATGAGGACGTGCTGTCCCCGATCACGGCGTCC AGGCTAACGTTCGAGAACATTCGGATGGACGGGGTGGCCAACCCGGTGATCGTGGACCAG AAGTACTGCCCCGAGAAGGACTGCCCCGAGAAGAAGGGGAGCAAGACGGTGACCATCAAG AACGTGACGTTCCGCAACATCACCGGCACCTCCAACACGCCGGAGGCCGTCAGCCTACTC TGCTCTGACCAGCTGCCCTGCAGCGGCATGGAGCTGCTCGACGTCAACCTGAAGTACGAC GGCAAGGACAACAAGACCATGGCCGTCTGCACCAACGCCAAGGGCATCTCCAAGGGCTCG CTCCAGGCCCTCGCTTGCCTCTGA

Peptide Sequence

PEP ID	Os01t0517500-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:18352836:18354506:-1 gene:Os01g0517500 transcript:Os01t0517500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Polygalacturonase (Fragment). (Os01t0517500-01)
Sequence	MAVTMDNVIRFMFILSVVYGAAYAKKSEAKVASAPGLAAAVNTVFDITELGAVADGKTDS TKAVQDAWDAACGLAGSQKVVIPKGEFMTGPLNFSGPCKGYVTVQIDGTMFGSNDIPKYN KGNWIEILHIDNVLVNGSGTLDGQGAAVWKDECKILPNTLVLDYVKNGTVSGLKLVNAKF FHINVYMSKGVTIKNVTITAVANSPNTDGVHIGDSSEISVSDATIATGDDCISVGPGSSR ISIQGITCGPGQGISVGCLGRFKDEKDVTDVTVRDCVLRNTSNGVRIKSYEDVLSPITAS RLTFENIRMDGVANPVIVDQKYCPEKDCPEKKGSKTVTIKNVTFRNITGTSNTPEAVSLL CSDQLPCSGMELLDVNLKYDGKDNKTMAVCTNAKGISKGSLQALACL

Transcript Sequence

Transcript ID	Os01t0517500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:18352836:18354506:-1 gene:Os01g0517500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Polygalacturonase (Fragment). (Os01t0517500-01)
Sequence	GAGAGAAGGAATCCGATCGAGCGTTTCCCGAGCAGTAGCGACAGAAAATGGCTGTGACGA TGGACAACGTCATCAGGTTCATGTTCATCCTTAGCGTCGTCTACGGCGCCGCATATGCCA AAAAGTCTGAGGCCAAGGTCGCTAGTGCTCCTGGCCTAGCAGCGGCGGTCAACACGGTCT TCGACATCACCGAGCTCGGCGCCGTCGCTGACGGCAAGACAGATAGCACCAAGGCGGTCC AGGATGCATGGGACGCGGCGTGCGGGTTGGCCGGGTCACAGAAGGTGGTGATCCCCAAGG GAGAATTCATGACCGGGCCCCTCAACTTCAGCGGGCCGTGCAAGGGCTACGTCACCGTCC AGATCGATGGCACCATGTTTGGCTCCAACGACATCCCCAAGTACAACAAGGGCAACTGGA TCGAGATCCTCCACATCGACAACGTCCTCGTCAACGGCTCCGGCACCCTCGACGGCCAGG GCGCCGCCGTCTGGAAAGACGAATGCAAGATCTTGCCCAACACGTTGGTGCTGGACTACG TGAAGAACGGGACCGTGTCGGGGCTCAAGCTGGTGAACGCCAAGTTCTTCCACATCAACG TGTACATGTCCAAGGGTGTGACGATCAAGAACGTGACCATCACCGCGGTGGCGAACAGCC CGAACACGGACGGTGTCCACATCGGCGACTCGTCGGAGATCAGCGTGTCGGACGCGACCA TCGCGACGGGGGACGACTGCATCTCCGTGGGGCCGGGGAGCTCGCGGATCAGCATCCAGG GGATCACCTGTGGGCCCGGGCAGGGGATCAGCGTGGGGTGCCTGGGCAGGTTCAAGGACG AGAAGGACGTGACGGACGTGACGGTCCGCGACTGCGTGCTCCGCAACACCTCCAACGGCG TCCGGATCAAGTCGTATGAGGACGTGCTGTCCCCGATCACGGCGTCCAGGCTAACGTTCG AGAACATTCGGATGGACGGGGTGGCCAACCCGGTGATCGTGGACCAGAAGTACTGCCCCG AGAAGGACTGCCCCGAGAAGAAGGGGAGCAAGACGGTGACCATCAAGAACGTGACGTTCC GCAACATCACCGGCACCTCCAACACGCCGGAGGCCGTCAGCCTACTCTGCTCTGACCAGC TGCCCTGCAGCGGCATGGAGCTGCTCGACGTCAACCTGAAGTACGACGGCAAGGACAACA AGACCATGGCCGTCTGCACCAACGCCAAGGGCATCTCCAAGGGCTCGCTCCAGGCCCTCG CTTGCCTCTGATCTCGATCCATCCATCGTCGACCGGCGTTATATCATCTCTCTATCTATC GTCGTCTGATATATGTATAATTCGCTTATATAGTATGTACTAGAAACACAACGGGGCTTT GCCGAGTGTACATGCGCCAGCCCAATTGGGCCAAATAGAGGTATTACCTGTTACATTTAT ATGAACAGGAGTGAATG