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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0516600-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:18284632:18287130:1 gene:Os01g0516600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Stable protein 1. (Os01t0516600-01);Similar to Stable protein 1. (Os01t0516600-02)
Sequence

ATGGCGGCGGAGGCCGGGAGCGGCGGCGTGGTGAAGCACATCCTGCTGGCGCGGTTCAAG
GAGGACGTGGCGCCGGAGCGGCTGGACCAGCTCATCCGCGGCTATGCCGGCCTCGTCGAC
CTCGTCCCTTCCATGAAGGCCTTCCACTGGGGAACTGACGTGAGCATAGAGAACATGCAC
CAAGGATTCACACACGTATTTGAGTCCACTTTTGAAAGCACAGAAGGAGTCAAGGAGTAC
ATTGAACACCCAGCACATGTTGAATTTGCAAACGAGTTCCTGCCTGTGTTGGAGAAGACC
CTCATAATCGACTACAAGCCAACTATCGTAAATAACAGCTGA

Peptide Sequence

PEP ID

Os01t0516600-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:18284632:18287130:1 gene:Os01g0516600 transcript:Os01t0516600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Stable protein 1. (Os01t0516600-01);Similar to Stable protein 1. (Os01t0516600-02)
Sequence

MAAEAGSGGVVKHILLARFKEDVAPERLDQLIRGYAGLVDLVPSMKAFHWGTDVSIENMH
QGFTHVFESTFESTEGVKEYIEHPAHVEFANEFLPVLEKTLIIDYKPTIVNNS

Transcript Sequence

Transcript ID

Os01t0516600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:18284632:18287130:1 gene:Os01g0516600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Stable protein 1. (Os01t0516600-01);Similar to Stable protein 1. (Os01t0516600-02)
Sequence

ATTTGCCAAGCCAATCGGGAGATCGAGCAGAGCTGCAGAGAGCAGAGGGAGATCGGAGAT
CGAGAGCGCGCGGGGGGAGCTAGAGCTAGGTAGCGAGGGAGGCTGCTGCAGCAGCGAGAA
GCCCAAGCCCCTAGGGCGATGGCGGCGGAGGCCGGGAGCGGCGGCGTGGTGAAGCACATC
CTGCTGGCGCGGTTCAAGGAGGACGTGGCGCCGGAGCGGCTGGACCAGCTCATCCGCGGC
TATGCCGGCCTCGTCGACCTCGTCCCTTCCATGAAGGCCTTCCACTGGGGAACTGACGTG
AGCATAGAGAACATGCACCAAGGATTCACACACGTATTTGAGTCCACTTTTGAAAGCACA
GAAGGAGTCAAGGAGTACATTGAACACCCAGCACATGTTGAATTTGCAAACGAGTTCCTG
CCTGTGTTGGAGAAGACCCTCATAATCGACTACAAGCCAACTATCGTAAATAACAGCTGA
GCTAATAACAGTTTGGATGCTTCTTTCATCGTTAATTGCACTTCAGAATGTCTGGGAGAA
TTTTATTTTTAGTTACCCAAATTTGAACTTTCATGCTGAATAAATTTGCCCTATATATTA
CCTTTCGAGAGC