Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0514600-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:18186985:18193374:1 gene:Os01g0514600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Fimbrin 1 (AtFIM1). (Os01t0514600-01)
Sequence

ATGGGGCTCGACGGGCTGGTCGTCGTCTCCGACCCTTACCTGCAGCGCCGCTTCTCGCAG
GCCGACCTCCGCGCCCTCCAGGCCCAGTACGCGGCGCTGCGGGACGCGGCGCCGAGCGGG
AGGCTGCGGCTGCGGGACCTGCCTGCGGCGCTATCATCCGCCGGCGTCGGGGCCGGGAAA
GGAGGGGACGCCGAGAAGGAGAACAGCGCGCCTGCGGCGGCGCAGCTCACGGAGGAGGAG
TGGGCGTCCGTGCTCAAGGCCGTCGCACGCGCCGACGAGAGGCCGCACCAGGGCGTCGGC
TTCGAGCTCTTCCTCCGCGTCTACGCCGAGATGCAGCTGCGGCTCAAGGGCGCCGCCGCC
GGGAAGAAGGCGGGCGGCGGCGGCGGGGGCATCGCGCGCTCCTCCTCCTCGTCGGCCGCG
GCGTTCCTCACGGCCGCCACCACCACCCTGCTCCACACCATTAGCGAGTCCGAGAAGGCC
TCCTACGTCGGCCACATCAACGCCTACCTCGCCGAGGATCCCTTCCTCAACACCGCGCTC
CCCATCGATCCGGCCACCGATCACCTCTTCCACCTCACCAAGGACGGCGTGCTCCTATGC
AAGCTCATCAACCTGGCCGTGCCGGGGACGATCGACGAGCGCGCCATCAACACCAAGAAG
CTGCTCAACCTGTGGGAGAAGAACGAGAACCACACCCTCTGCCTCAATTCTGCCAAGGCC
ATCGGCTGCACTGTCGTGAACATCGGCACGCAGGACCTCGCCGAGGGAAGGCCTCACCTT
ATCTTGGGTTTGATATCACAAATAATTAAGATACAACTTTTGGCTGATGTAAACCTGAAG
AGCACACCTCAATTGGTAGAATTAGTTGAAGACAGCAAGGAGATGGAGGAGCTTATGAGC
TTATCTCCTGAAAAAATATTACTCAGATGGATGAACTTTCAATTGAAGAAAGGAGGTTTC
CAAAGAACAGTAACAAATTTTTCATCAGATATAAAAGATAGTGAGGCATATGCTTGTCTA
CTGAATGTCTTGGCACCTGAATGCAGTGCTAAACCATCCCCAATGTCAGTTAAAGATCTT
CTTCATAGAGCAAGATTAGTTCTTGAGCATGCAGATAGGATGGGCTGCAAAAGATATCTG
ACCCCAAAAGACATTGTCGACGGTTTACCAAATCTAAATCTTGCTTTTGTGGCTCATATT
TTCCAGAAAAGGAATGGGCTGTCAAAACAAATGAAACAAGTTTCCTTTGTCGACGGACTC
TCTGATGATGCTCAAGTTTCGAGGGAAGAGAGGTCATTCCGGTTATGGATTAATAGCCTT
GGAATTTCTACATACATCAACAATGTGTTTGAGGATCTTAGAAATGGATGGGTGCTTCTT
GAGGTGATTGACAAGATTGCTCCTGGCTCAGTTAATTGGAAAATGGCAAATAGGCCCCCA
ATAAAATTACCATTCAGGAAAGTGGAAAATTGCAATCAAGTTCTGAAGATTGGGAAAGAA
CTAAAATTTTCCTTGGTGAATATTGCTGGTAATGATATTGTGCAAGGAAACAAGAAACTG
ATATTAGCTTTTCTGTGGCAATTGATGAGGTACAATATCCTTCAATTGTTAAAGAATCTG
AGATTCCATTCAAATGGTAAAGAGATCACAGATAACGACATACTGATTTGGGCAAACAAA
AAAGTAAAGGATTCTGGAAAGCATTCTCGAATGGAGAGTTTCAAGGATAGAAGCCTTTCA
AGTGGCATATTTTTCCTCAATTTACTTGGTGCCGTGGAACCTCGGGTTGTGAATTGGAGC
CTTGTTACCAAAGGAGAAAAAGATGAAGAAAAGCAAATGAATGCTTCATACATCATTTCT
GTGGCTAGGAAGCTTGGTTGCTCCATTTTCTTGCTACCAGAAGATATTCTGGAGGTGAAC
CAGAAAATGATGCTAACCTTGACAGCAAGCATAATGTACTGGCATTTGAAGAAGCCAACA
TCATTTTCATTGGACACCGAAAACGGCAGTTCATGCGAAACAAGCTCCATCTCAACATCA
GATGATTCTGCATCCGAGTCATCGTTCGATGATAGTGGAGCTAGATAG

Peptide Sequence

PEP ID

Os01t0514600-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:18186985:18193374:1 gene:Os01g0514600 transcript:Os01t0514600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Fimbrin 1 (AtFIM1). (Os01t0514600-01)
Sequence

MGLDGLVVVSDPYLQRRFSQADLRALQAQYAALRDAAPSGRLRLRDLPAALSSAGVGAGK
GGDAEKENSAPAAAQLTEEEWASVLKAVARADERPHQGVGFELFLRVYAEMQLRLKGAAA
GKKAGGGGGGIARSSSSSAAAFLTAATTTLLHTISESEKASYVGHINAYLAEDPFLNTAL
PIDPATDHLFHLTKDGVLLCKLINLAVPGTIDERAINTKKLLNLWEKNENHTLCLNSAKA
IGCTVVNIGTQDLAEGRPHLILGLISQIIKIQLLADVNLKSTPQLVELVEDSKEMEELMS
LSPEKILLRWMNFQLKKGGFQRTVTNFSSDIKDSEAYACLLNVLAPECSAKPSPMSVKDL
LHRARLVLEHADRMGCKRYLTPKDIVDGLPNLNLAFVAHIFQKRNGLSKQMKQVSFVDGL
SDDAQVSREERSFRLWINSLGISTYINNVFEDLRNGWVLLEVIDKIAPGSVNWKMANRPP
IKLPFRKVENCNQVLKIGKELKFSLVNIAGNDIVQGNKKLILAFLWQLMRYNILQLLKNL
RFHSNGKEITDNDILIWANKKVKDSGKHSRMESFKDRSLSSGIFFLNLLGAVEPRVVNWS
LVTKGEKDEEKQMNASYIISVARKLGCSIFLLPEDILEVNQKMMLTLTASIMYWHLKKPT
SFSLDTENGSSCETSSISTSDDSASESSFDDSGAR

Transcript Sequence

Transcript ID

Os01t0514600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:18186985:18193374:1 gene:Os01g0514600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Fimbrin 1 (AtFIM1). (Os01t0514600-01)
Sequence

GCTTTATTTTGAAACCAACTAACGCTCTTCCTCCCCCTCCTCCTCGGCCCATCCCCCCTC
TCTCTCTCCTCTGAGCTGCCACCCCACCACTCCAGAGAGAGAGGCGGCCACCGATCCGTC
CCCCGCCTCTCTCCTCCGATCCATCCGCTCCGCGCCATGGGGCTCGACGGGCTGGTCGTC
GTCTCCGACCCTTACCTGCAGCGCCGCTTCTCGCAGGCCGACCTCCGCGCCCTCCAGGCC
CAGTACGCGGCGCTGCGGGACGCGGCGCCGAGCGGGAGGCTGCGGCTGCGGGACCTGCCT
GCGGCGCTATCATCCGCCGGCGTCGGGGCCGGGAAAGGAGGGGACGCCGAGAAGGAGAAC
AGCGCGCCTGCGGCGGCGCAGCTCACGGAGGAGGAGTGGGCGTCCGTGCTCAAGGCCGTC
GCACGCGCCGACGAGAGGCCGCACCAGGGCGTCGGCTTCGAGCTCTTCCTCCGCGTCTAC
GCCGAGATGCAGCTGCGGCTCAAGGGCGCCGCCGCCGGGAAGAAGGCGGGCGGCGGCGGC
GGGGGCATCGCGCGCTCCTCCTCCTCGTCGGCCGCGGCGTTCCTCACGGCCGCCACCACC
ACCCTGCTCCACACCATTAGCGAGTCCGAGAAGGCCTCCTACGTCGGCCACATCAACGCC
TACCTCGCCGAGGATCCCTTCCTCAACACCGCGCTCCCCATCGATCCGGCCACCGATCAC
CTCTTCCACCTCACCAAGGACGGCGTGCTCCTATGCAAGCTCATCAACCTGGCCGTGCCG
GGGACGATCGACGAGCGCGCCATCAACACCAAGAAGCTGCTCAACCTGTGGGAGAAGAAC
GAGAACCACACCCTCTGCCTCAATTCTGCCAAGGCCATCGGCTGCACTGTCGTGAACATC
GGCACGCAGGACCTCGCCGAGGGAAGGCCTCACCTTATCTTGGGTTTGATATCACAAATA
ATTAAGATACAACTTTTGGCTGATGTAAACCTGAAGAGCACACCTCAATTGGTAGAATTA
GTTGAAGACAGCAAGGAGATGGAGGAGCTTATGAGCTTATCTCCTGAAAAAATATTACTC
AGATGGATGAACTTTCAATTGAAGAAAGGAGGTTTCCAAAGAACAGTAACAAATTTTTCA
TCAGATATAAAAGATAGTGAGGCATATGCTTGTCTACTGAATGTCTTGGCACCTGAATGC
AGTGCTAAACCATCCCCAATGTCAGTTAAAGATCTTCTTCATAGAGCAAGATTAGTTCTT
GAGCATGCAGATAGGATGGGCTGCAAAAGATATCTGACCCCAAAAGACATTGTCGACGGT
TTACCAAATCTAAATCTTGCTTTTGTGGCTCATATTTTCCAGAAAAGGAATGGGCTGTCA
AAACAAATGAAACAAGTTTCCTTTGTCGACGGACTCTCTGATGATGCTCAAGTTTCGAGG
GAAGAGAGGTCATTCCGGTTATGGATTAATAGCCTTGGAATTTCTACATACATCAACAAT
GTGTTTGAGGATCTTAGAAATGGATGGGTGCTTCTTGAGGTGATTGACAAGATTGCTCCT
GGCTCAGTTAATTGGAAAATGGCAAATAGGCCCCCAATAAAATTACCATTCAGGAAAGTG
GAAAATTGCAATCAAGTTCTGAAGATTGGGAAAGAACTAAAATTTTCCTTGGTGAATATT
GCTGGTAATGATATTGTGCAAGGAAACAAGAAACTGATATTAGCTTTTCTGTGGCAATTG
ATGAGGTACAATATCCTTCAATTGTTAAAGAATCTGAGATTCCATTCAAATGGTAAAGAG
ATCACAGATAACGACATACTGATTTGGGCAAACAAAAAAGTAAAGGATTCTGGAAAGCAT
TCTCGAATGGAGAGTTTCAAGGATAGAAGCCTTTCAAGTGGCATATTTTTCCTCAATTTA
CTTGGTGCCGTGGAACCTCGGGTTGTGAATTGGAGCCTTGTTACCAAAGGAGAAAAAGAT
GAAGAAAAGCAAATGAATGCTTCATACATCATTTCTGTGGCTAGGAAGCTTGGTTGCTCC
ATTTTCTTGCTACCAGAAGATATTCTGGAGGTGAACCAGAAAATGATGCTAACCTTGACA
GCAAGCATAATGTACTGGCATTTGAAGAAGCCAACATCATTTTCATTGGACACCGAAAAC
GGCAGTTCATGCGAAACAAGCTCCATCTCAACATCAGATGATTCTGCATCCGAGTCATCG
TTCGATGATAGTGGAGCTAGATAGATTCGTGAGACCATGAAAGGAAACGATCTGACTGCT
TGTTGAAACGTGGGATGCTCGTCATCCCATGAAGGGTTGGCTATGTTCTTGATTCTTTGC
TATAATTTGGAGAGCAAATGCATTCAAGATTGGGATGGGAATGGTAAAGAGTTTTGATTG
TTTCGTTTTATGGGTTTTTTGTAGTGTGAAATCGATTTGATGAGAGATGTGTAACATCCT
GTAAATATTGACACAGGTAGCCGATATCTGTAACATCATATAGTGGCAGTGGATTTTCTG
AAATCCACATAGATTG