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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0513700-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:18135346:18138311:-1 gene:Os01g0513700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to trafficking protein particle complex subunit 1. (Os01t0513700-01);Sybindin-like protein family protein. (Os01t0513700-02)
Sequence

ATGTTCTCCTTCGGCGGCGGGTCGTCGCTGACGTCGGTGGTGCCGGACGCGACCCCGGCC
CCGGCGGCGCCGCCGGGCACCGGGACGGGCGCCAACGCGCAGGTGCTCTACGTCTTCAAC
CGCGGCGGCGTCTGCCTGCTGTACCGCGAGTGGCACCGGCCGCTCCGCACGCTCGACCCC
ACCCAGGACCAGAAGCTCATGTTCGGCCTCCTCTTCTCCCTCCGCTCCTTCACCGCCAAG
ATCGATCCCACCACAGCAGAAAAGGGGAATCTTGGGGTGCCACTACTGCCGGGCCAGGGT
TGCTCATTTTACAGCTTCAAGACAAACACATACAAATTGAACTTCCTAGAGAGCCCTTCT
GGTATCAAGCTTATTCTAATTACACATCCAAGGACTGGTGATCAACGTGACACGCTGAAG
CATATCTACAACCTATATGTGGAATATGTTGTAAAAAATCCTTTGTACGCTCCTGGCACA
CCAATCAAGTGCGAGCTTTTCAATAAGCACCTTGATCAATATGTCAAAACATTGATATGA

Peptide Sequence

PEP ID

Os01t0513700-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:18135346:18138311:-1 gene:Os01g0513700 transcript:Os01t0513700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to trafficking protein particle complex subunit 1. (Os01t0513700-01);Sybindin-like protein family protein. (Os01t0513700-02)
Sequence

MFSFGGGSSLTSVVPDATPAPAAPPGTGTGANAQVLYVFNRGGVCLLYREWHRPLRTLDP
TQDQKLMFGLLFSLRSFTAKIDPTTAEKGNLGVPLLPGQGCSFYSFKTNTYKLNFLESPS
GIKLILITHPRTGDQRDTLKHIYNLYVEYVVKNPLYAPGTPIKCELFNKHLDQYVKTLI

Transcript Sequence

Transcript ID

Os01t0513700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:18135346:18138311:-1 gene:Os01g0513700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to trafficking protein particle complex subunit 1. (Os01t0513700-01);Sybindin-like protein family protein. (Os01t0513700-02)
Sequence

GTCCTCACCTCCCGTGAGAGATCTCCTCTTGTGCGGGCGGAGATCCACAGCCGGCGGGCT
CGACCTCCTCCTCGGGCGCCATCCACGCGCGCGCGATGTTCTCCTTCGGCGGCGGGTCGT
CGCTGACGTCGGTGGTGCCGGACGCGACCCCGGCCCCGGCGGCGCCGCCGGGCACCGGGA
CGGGCGCCAACGCGCAGGTGCTCTACGTCTTCAACCGCGGCGGCGTCTGCCTGCTGTACC
GCGAGTGGCACCGGCCGCTCCGCACGCTCGACCCCACCCAGGACCAGAAGCTCATGTTCG
GCCTCCTCTTCTCCCTCCGCTCCTTCACCGCCAAGATCGATCCCACCACAGCAGAAAAGG
GGAATCTTGGGGTGCCACTACTGCCGGGCCAGGGTTGCTCATTTTACAGCTTCAAGACAA
ACACATACAAATTGAACTTCCTAGAGAGCCCTTCTGGTATCAAGCTTATTCTAATTACAC
ATCCAAGGACTGGTGATCAACGTGACACGCTGAAGCATATCTACAACCTATATGTGGAAT
ATGTTGTAAAAAATCCTTTGTACGCTCCTGGCACACCAATCAAGTGCGAGCTTTTCAATA
AGCACCTTGATCAATATGTCAAAACATTGATATGATACTTTTAGAGGTTATACCGATCCT
AAATACGGTTAATGTCATATCTTCTGGGTAACTTTGGTACGCTTACTGGTATCAGTGTGC
TATTTGATTTATTACTACATTAAGAGGTCTAGTGTTCCTTGAGGAATATGCTAAGACTTT
TCTATCACAAACATTCCCTTGTTCCTGTTGTACATTGAACAATGCTGCATTACATCTGTT
GAACTGC