Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0512200-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:18051553:18054687:1 gene:Os01g0512200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-type fold domain containing protein. (Os01t0512200-01);Clathrin/coatomer adaptor, adaptin-like, N-terminal domain containing protein. (Os01t0512200-02)
Sequence	ATGGCCTCCGCCCCGCCGGCGGCGCCGGCGCCGGCGCCATCGCTGGTAGACACGCTATTC CAGCGCTCCCTCGACGACCTCGTCAAGTCCCTCCGCGCCGACCCGTCGGCCGCCGGCGAG TCCGCCGCCGTCGCGCGCGCGCTCTCCGAGATCCACCGGGAGATCCGCGCCCCCGACACC GCCACCAAGGCCGTGGCGCTCCAGAAGCTGACCTACCTCTCGTCGCTCCACTTCGCCCCC GTCGCCTCCCACCCGCTCGCCTTCCCGGCCATCGAGCTCATCGCCTCGCCGCAGCTACCC CACAGGCGCCTCGCCTACCTTGCCGCCTCGCTCTCCCTCCACCCGGCCTCGCTCTCCCTC CTCCCGCTCGCCACCCATCAGCTCCACAAGGACCTCTCCCCCTCCACCTCCAGCGCCGCC AACCACCACGTCACGGCCCTCGCGCTCCAGCTGCTCGCCTCCCCCGCCGCCGCCGCCGCG CCCGACCTCCCCGTCCACCTCGCGCACGACCTCGTGCCCCACCTCTCCCGCGGGAGCCCC CGGGCGATCGCGGCCGCCGCGCGTGTCATAGCCGCCTCGCCGTCCGCGGCCGTGCCGGTC CTTTTCAAGCCACTGGCCGCGTGCCTCGCGTCGCCTGACCCGCGGGCGTCGGCTGCTGCC GCAGCTGCATTCTGTGAGCTGTCGGCGCCGCCAGCCGATGCTGCTCCTTTCCTGCCGCTG GCGCCCGACCTCTACAATCTGCTCACCACGTCCCGCTCCAACTGGGCGCTCATCAAGGTG CTCAAGGTGTTTGCACGGCTGGCTCCTCTGGAATCACGCCTCGCCGCACGGATTGTCGAC CCGGTGTGCCAGCTTCTCGCGCGTTCTGCTGCTATGTCCCTGACGTTTGAGTGCATCCGG ACTGTTCTAACTGCCCTGCCGGCACATGATGCTGCCGTGCGCCTTGCCATTGGGAAGGCC AAGGAGTTCCTTGCTGCTGAGGATGATCCCAACCTGCGGTACCTTGGCCTCCTTGCGCTT GGTATGCTTGGACCGGCATATGCATCGACGTTGCATGAATGCCGTGGTGTGATTGCCCAA TCACTGGGTGATGCTGACTCAAACATCTGCCGGGAGGCGTTGCACCTCATGATGGGGTTG ATCGATGACAGCAATGTCACGGACATTGCTGGCATGCTGGTCAGTCATGCTTCGAAGTCA GACCCAGAGTTTGCAAATGACATTCTTGGCGCTGTTCTTTCAGCATGTGGGCGCAATGTG TATGAGCTGGTATCGGACTTTGATTGGTATGTCTCACTCCTCACAGATATGGGTAGGAAC CTTCATTGTGCACAGGGGGATGAGATTGGTCGGCAGCTTGTTGATGTGGGACTGAGGGTG CAGGATGCACGGCCAGAGCTTGTTCATTCATCTCGAACTCTTCTCATTGATCCTGCTTTG CTTGGGAACCACCTCCTTTGTCCTGTTCTTTCTGCTGCTGCATGGGTCTCAGGTGAGTAT GTGAACTTCACGAAGGATCCTGTTGAGCTTGTTGAGGCACTTCTGCAGCCAAGGATCAGC CTCCTGCCGATGTCCGTGAGAGCTGTCTACATCCAGGCAGTACTTAAAGTGATCACTTTC TGTTGCAATTTGTATGTTGAGAGGTTGAGTGATTCAAGCAAGGAAGTGTCTGTAGCATTG AATGGGTTATCTATGGATCAAACTGTTAGTGGGGGAAGTGACGCTCCAATTGGGTCTAGC AATGGACAAATTACAGTCCCTAGGATGATGGAAAAGGACCCTTTTTCACTTAAATCGGTT GTTCACATGATTAACTTGATTGAAACAACAGTTGGCCCACTTGTTGAGTGCAATGAGGTT GAGGTCCTGGAAAGGGCAAGAAACTTGATTGGTTTTGTTTATTCGCTAAGAGAGATTCAA GAATTGAAGGAAAGCAAGTTTGATGATGATAAGCATAGCAGGGTGAAGGAGCTTGTTAAG AATATGCAAACAGTATTATCTCACGAAATAGGGCCTGTTTCTTTAAATGCACAAGAGAAA GTATCCCTTCCAGATGATCTTGTCCTGAATGAAAATCTTGCCGAGCTTGTTGACATCATC AGTGAAGATGACACTACTCTGTCATCTTCAATTGTTTTCTACCCTCGTAGCTGTGGTTCA GTCGAAACCAGAGATGAACCTGCATTATCACTTGGTTCATCTTCTCTTCTTTCTGAGCAC CGTAAAAGGCACGGACTGTACTATCTTCCAACAGGAAAAGCGGAGGATGGGCCAGTTGAT TATCCTCATGCCAATGATCCTCTGCTGCCTGCTAGCAGCGAAAGTGCTCTGGATGATAAA TTGAAGACTATCCAGCCTGTTACCGGTGGGAAAAAACCGAAGGCCGTCAAGTCCAGACCA AAAGTAGTGAAGTTGGATGGTGAGGATTTCCTAAGTTCTATGGTGGCTAGTGCAAGTGTT CCAAAAGAAGATTCTTTATCTGGTGCTGTACGTGGTGTACTGTTGGGTAGAGATCTCAAG CCATCATCTTCACAAAAGGCTTCAGATAAGGCTTACGAAGGAATTATAAACAAAATGGAC TCTGGTGAATCTAGTTCTCAGTGGAAAAATAATGTAGATGCTGATTTCGTAGGCCATCCC ACTTCAAGTTCTAGACCAAGTATTCAACAGAGCCATGATAAAGAGAGTACAAACCCTCTT GAAAGTGATGGGAAGGAAGCGAGAAAACACAGAAGATCTAGGAGTGGGCATCGTCAAGGA AAACATAAGCATAGAGAAAGGCATTGCACTCAACCTGATGTACCTCAAGCTCCTATAATC CAGGATTTTCTTCTATAG

Peptide Sequence

PEP ID	Os01t0512200-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:18051553:18054687:1 gene:Os01g0512200 transcript:Os01t0512200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-type fold domain containing protein. (Os01t0512200-01);Clathrin/coatomer adaptor, adaptin-like, N-terminal domain containing protein. (Os01t0512200-02)
Sequence	MASAPPAAPAPAPSLVDTLFQRSLDDLVKSLRADPSAAGESAAVARALSEIHREIRAPDT ATKAVALQKLTYLSSLHFAPVASHPLAFPAIELIASPQLPHRRLAYLAASLSLHPASLSL LPLATHQLHKDLSPSTSSAANHHVTALALQLLASPAAAAAPDLPVHLAHDLVPHLSRGSP RAIAAAARVIAASPSAAVPVLFKPLAACLASPDPRASAAAAAAFCELSAPPADAAPFLPL APDLYNLLTTSRSNWALIKVLKVFARLAPLESRLAARIVDPVCQLLARSAAMSLTFECIR TVLTALPAHDAAVRLAIGKAKEFLAAEDDPNLRYLGLLALGMLGPAYASTLHECRGVIAQ SLGDADSNICREALHLMMGLIDDSNVTDIAGMLVSHASKSDPEFANDILGAVLSACGRNV YELVSDFDWYVSLLTDMGRNLHCAQGDEIGRQLVDVGLRVQDARPELVHSSRTLLIDPAL LGNHLLCPVLSAAAWVSGEYVNFTKDPVELVEALLQPRISLLPMSVRAVYIQAVLKVITF CCNLYVERLSDSSKEVSVALNGLSMDQTVSGGSDAPIGSSNGQITVPRMMEKDPFSLKSV VHMINLIETTVGPLVECNEVEVLERARNLIGFVYSLREIQELKESKFDDDKHSRVKELVK NMQTVLSHEIGPVSLNAQEKVSLPDDLVLNENLAELVDIISEDDTTLSSSIVFYPRSCGS VETRDEPALSLGSSSLLSEHRKRHGLYYLPTGKAEDGPVDYPHANDPLLPASSESALDDK LKTIQPVTGGKKPKAVKSRPKVVKLDGEDFLSSMVASASVPKEDSLSGAVRGVLLGRDLK PSSSQKASDKAYEGIINKMDSGESSSQWKNNVDADFVGHPTSSSRPSIQQSHDKESTNPL ESDGKEARKHRRSRSGHRQGKHKHRERHCTQPDVPQAPIIQDFLL

Transcript Sequence

Transcript ID	Os01t0512200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:18051553:18054687:1 gene:Os01g0512200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-type fold domain containing protein. (Os01t0512200-01);Clathrin/coatomer adaptor, adaptin-like, N-terminal domain containing protein. (Os01t0512200-02)
Sequence	TCTCCGATCCGCCGCGCCGGCAAATCCCCCACAAGCCCAACTCACGCCGATCCACCTCCG ATGGCCTCCGCCCCGCCGGCGGCGCCGGCGCCGGCGCCATCGCTGGTAGACACGCTATTC CAGCGCTCCCTCGACGACCTCGTCAAGTCCCTCCGCGCCGACCCGTCGGCCGCCGGCGAG TCCGCCGCCGTCGCGCGCGCGCTCTCCGAGATCCACCGGGAGATCCGCGCCCCCGACACC GCCACCAAGGCCGTGGCGCTCCAGAAGCTGACCTACCTCTCGTCGCTCCACTTCGCCCCC GTCGCCTCCCACCCGCTCGCCTTCCCGGCCATCGAGCTCATCGCCTCGCCGCAGCTACCC CACAGGCGCCTCGCCTACCTTGCCGCCTCGCTCTCCCTCCACCCGGCCTCGCTCTCCCTC CTCCCGCTCGCCACCCATCAGCTCCACAAGGACCTCTCCCCCTCCACCTCCAGCGCCGCC AACCACCACGTCACGGCCCTCGCGCTCCAGCTGCTCGCCTCCCCCGCCGCCGCCGCCGCG CCCGACCTCCCCGTCCACCTCGCGCACGACCTCGTGCCCCACCTCTCCCGCGGGAGCCCC CGGGCGATCGCGGCCGCCGCGCGTGTCATAGCCGCCTCGCCGTCCGCGGCCGTGCCGGTC CTTTTCAAGCCACTGGCCGCGTGCCTCGCGTCGCCTGACCCGCGGGCGTCGGCTGCTGCC GCAGCTGCATTCTGTGAGCTGTCGGCGCCGCCAGCCGATGCTGCTCCTTTCCTGCCGCTG GCGCCCGACCTCTACAATCTGCTCACCACGTCCCGCTCCAACTGGGCGCTCATCAAGGTG CTCAAGGTGTTTGCACGGCTGGCTCCTCTGGAATCACGCCTCGCCGCACGGATTGTCGAC CCGGTGTGCCAGCTTCTCGCGCGTTCTGCTGCTATGTCCCTGACGTTTGAGTGCATCCGG ACTGTTCTAACTGCCCTGCCGGCACATGATGCTGCCGTGCGCCTTGCCATTGGGAAGGCC AAGGAGTTCCTTGCTGCTGAGGATGATCCCAACCTGCGGTACCTTGGCCTCCTTGCGCTT GGTATGCTTGGACCGGCATATGCATCGACGTTGCATGAATGCCGTGGTGTGATTGCCCAA TCACTGGGTGATGCTGACTCAAACATCTGCCGGGAGGCGTTGCACCTCATGATGGGGTTG ATCGATGACAGCAATGTCACGGACATTGCTGGCATGCTGGTCAGTCATGCTTCGAAGTCA GACCCAGAGTTTGCAAATGACATTCTTGGCGCTGTTCTTTCAGCATGTGGGCGCAATGTG TATGAGCTGGTATCGGACTTTGATTGGTATGTCTCACTCCTCACAGATATGGGTAGGAAC CTTCATTGTGCACAGGGGGATGAGATTGGTCGGCAGCTTGTTGATGTGGGACTGAGGGTG CAGGATGCACGGCCAGAGCTTGTTCATTCATCTCGAACTCTTCTCATTGATCCTGCTTTG CTTGGGAACCACCTCCTTTGTCCTGTTCTTTCTGCTGCTGCATGGGTCTCAGGTGAGTAT GTGAACTTCACGAAGGATCCTGTTGAGCTTGTTGAGGCACTTCTGCAGCCAAGGATCAGC CTCCTGCCGATGTCCGTGAGAGCTGTCTACATCCAGGCAGTACTTAAAGTGATCACTTTC TGTTGCAATTTGTATGTTGAGAGGTTGAGTGATTCAAGCAAGGAAGTGTCTGTAGCATTG AATGGGTTATCTATGGATCAAACTGTTAGTGGGGGAAGTGACGCTCCAATTGGGTCTAGC AATGGACAAATTACAGTCCCTAGGATGATGGAAAAGGACCCTTTTTCACTTAAATCGGTT GTTCACATGATTAACTTGATTGAAACAACAGTTGGCCCACTTGTTGAGTGCAATGAGGTT GAGGTCCTGGAAAGGGCAAGAAACTTGATTGGTTTTGTTTATTCGCTAAGAGAGATTCAA GAATTGAAGGAAAGCAAGTTTGATGATGATAAGCATAGCAGGGTGAAGGAGCTTGTTAAG AATATGCAAACAGTATTATCTCACGAAATAGGGCCTGTTTCTTTAAATGCACAAGAGAAA GTATCCCTTCCAGATGATCTTGTCCTGAATGAAAATCTTGCCGAGCTTGTTGACATCATC AGTGAAGATGACACTACTCTGTCATCTTCAATTGTTTTCTACCCTCGTAGCTGTGGTTCA GTCGAAACCAGAGATGAACCTGCATTATCACTTGGTTCATCTTCTCTTCTTTCTGAGCAC CGTAAAAGGCACGGACTGTACTATCTTCCAACAGGAAAAGCGGAGGATGGGCCAGTTGAT TATCCTCATGCCAATGATCCTCTGCTGCCTGCTAGCAGCGAAAGTGCTCTGGATGATAAA TTGAAGACTATCCAGCCTGTTACCGGTGGGAAAAAACCGAAGGCCGTCAAGTCCAGACCA AAAGTAGTGAAGTTGGATGGTGAGGATTTCCTAAGTTCTATGGTGGCTAGTGCAAGTGTT CCAAAAGAAGATTCTTTATCTGGTGCTGTACGTGGTGTACTGTTGGGTAGAGATCTCAAG CCATCATCTTCACAAAAGGCTTCAGATAAGGCTTACGAAGGAATTATAAACAAAATGGAC TCTGGTGAATCTAGTTCTCAGTGGAAAAATAATGTAGATGCTGATTTCGTAGGCCATCCC ACTTCAAGTTCTAGACCAAGTATTCAACAGAGCCATGATAAAGAGAGTACAAACCCTCTT GAAAGTGATGGGAAGGAAGCGAGAAAACACAGAAGATCTAGGAGTGGGCATCGTCAAGGA AAACATAAGCATAGAGAAAGGCATTGCACTCAACCTGATGTACCTCAAGCTCCTATAATC CAGGATTTTCTTCTATAGTTGCTGAGGACTCCCTTGTTTTTGATACATTTCTATTGCCAA GTACATGTTACCTTTTGTTCATTCACATTCAGCGGTTTTTAGTTTTCACTTTCATTTCAT GGAAGTTATTTAGTTGGTTTATCTGTGGCAGCTGGTCTAACTGCCACTGTTGTATCCTGT ATATCTTTCTTGAGCATAGCACTTGATGTTCTTCATAGCTCCATGGCAATATATTTGTTC ATAGTGTACAAAACC