Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0506100-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:17605172:17607509:1 gene:Os01g0506100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0506100-01);Pentatricopeptide repeat domain containing protein. (Os01t0506100-02)
Sequence

ATGCTGGCCAGGCCTGGGCGGCTCGCCGCTTCCACCCTTCCCAACGATTCCGCCGCCGCC
GCCGCATCCACCGTCCTCTCCATACTCCGCGGCGAGGACCCCGCCAGCCTCCCCGCGGCC
GGCATCGACCCGTGCCCCGCCGTGTTCCAGCAACTCCGCCCGTCGCTGCCCACCGTCCCG
GACTCCGCGCTCCCGGCGCTGGCCCGATGGGCGGGCGAAGCCACCGCCGTCTCCCTCCTG
ACGTCCCGCGGCCTCTTTGCTGCCGCCTGGCGCCTCCTCCTGGCCCCTTCCCCCACGCCT
CCTCCCCTCGCCGCCTTCGCCCCGCTCGTCCGACGCTACGCCCGCCTCGGCCGCGCCCCC
GCCGCCCTCCGCGCCTTCCAGTTCCTCCGCCGCCACCCCGACCGCTACATGGCCGGCGGC
GACATCCCTGCCGCGGCGTCCCTGCTAAACATGGCGGTCGACGCGCTCTGCAAGGAGGGC
CACCCGCGCGCGGCCGTGGAGCTCTTCGAGCGGTGGCGCCGCGAGGAGCCCGACTCGCCA
CCAGATGAGCGGGCTTACAATATCCTTCTCCACGGCTGGAGCCGCGCCGGCAGGCTCGAC
AAGGTGGGGAAACTCTGGGCCGAGATGCGCCTCGCCGGGGTGCGCCCGACGGTGGTCACG
TATGGGACTCTCATCGAGGGGCTCTGCGTGAAGCGCAGGCCAGACCAGGCGATTGCGCTT
CTTGACGAGATGCGGGAAGAAGGGATCGAGGCCAATCTGCTTACTTGCAACCCCATTGTG
TACGCTCTTGCGCAGGCCGGCCGATTCCAGGACGCCCACAAGGTGCTCGAGAAATTTCCT
CTGTACGGTGTCGCGCCCAACATTTCCACCTTCAACTCGCTCGTGATGGGCTATTGCAAG
CATGGGGACCTTGCTGGGGCTAGCAGTGTGCTCAAGGTGATGACAGAACGGGGCATTTCG
CCGACCACAAGGACATACAATTATTTCTTCATGACCTTTGCCAAGAACAGCGATGTTGAG
TCAGGGATGAATTTTTATAGCAAAATGATCGGTAATGGCTATTCACCAGATCAGCTTACT
TATGTCCTCTTGGTCAAGATGTTGTCCAGGGCGAACCGGCTTGAACTTGTGGTGCAAATG
ATACAGGAGATGAGAACTCATGGTTTTGAGCCAGATTTGGCGACGAGTACCATGCTGATA
CATTTGCTTTGCCGGCGTCATCAATTTGAGGAGGCATGTGCTGAGTTTGAGGATATGTTT
AAGAGAGGAATTGTGCCCCAGTACATCACTTACCAGAAGCTTATGAGAGAGCTCAAGCGA
CTTGGTTTGGTTCATCTGATCCAAAAGTTGACAAATTTAATGCGCTCAGTGCCACATTCT
ACAAAGTTACCAGGCAGCTATAGGGATAAGGAAGGGGATGACTCCATGGAAAAGAGGAAA
TTGATATTGCAGAAAGCACAGGCTGTTTCAGATGTTTTGAAGGAGTGTAAAGATCCAAAG
GAGTTGGGCAAGCTCAAAGAAGATGAAGAGACTGATGTTGAGGTCGCAGATAGGTTAGTA
GCCAACATTAGAAGAAGTGTATATGGGGGTGCCTCAACGAGCTCTGTAATGGCACCTCTT
TCTTGA

Peptide Sequence

PEP ID

Os01t0506100-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:17605172:17607509:1 gene:Os01g0506100 transcript:Os01t0506100-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0506100-01);Pentatricopeptide repeat domain containing protein. (Os01t0506100-02)
Sequence

MLARPGRLAASTLPNDSAAAAASTVLSILRGEDPASLPAAGIDPCPAVFQQLRPSLPTVP
DSALPALARWAGEATAVSLLTSRGLFAAAWRLLLAPSPTPPPLAAFAPLVRRYARLGRAP
AALRAFQFLRRHPDRYMAGGDIPAAASLLNMAVDALCKEGHPRAAVELFERWRREEPDSP
PDERAYNILLHGWSRAGRLDKVGKLWAEMRLAGVRPTVVTYGTLIEGLCVKRRPDQAIAL
LDEMREEGIEANLLTCNPIVYALAQAGRFQDAHKVLEKFPLYGVAPNISTFNSLVMGYCK
HGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAKNSDVESGMNFYSKMIGNGYSPDQLT
YVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRHQFEEACAEFEDMF
KRGIVPQYITYQKLMRELKRLGLVHLIQKLTNLMRSVPHSTKLPGSYRDKEGDDSMEKRK
LILQKAQAVSDVLKECKDPKELGKLKEDEETDVEVADRLVANIRRSVYGGASTSSVMAPL
S

Transcript Sequence

Transcript ID

Os01t0506100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:17605172:17607509:1 gene:Os01g0506100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0506100-01);Pentatricopeptide repeat domain containing protein. (Os01t0506100-02)
Sequence

ACAATTCTCCACACGCAGCCGCCGGCGCCCGTCGAAATGCTGGCCAGGCCTGGGCGGCTC
GCCGCTTCCACCCTTCCCAACGATTCCGCCGCCGCCGCCGCATCCACCGTCCTCTCCATA
CTCCGCGGCGAGGACCCCGCCAGCCTCCCCGCGGCCGGCATCGACCCGTGCCCCGCCGTG
TTCCAGCAACTCCGCCCGTCGCTGCCCACCGTCCCGGACTCCGCGCTCCCGGCGCTGGCC
CGATGGGCGGGCGAAGCCACCGCCGTCTCCCTCCTGACGTCCCGCGGCCTCTTTGCTGCC
GCCTGGCGCCTCCTCCTGGCCCCTTCCCCCACGCCTCCTCCCCTCGCCGCCTTCGCCCCG
CTCGTCCGACGCTACGCCCGCCTCGGCCGCGCCCCCGCCGCCCTCCGCGCCTTCCAGTTC
CTCCGCCGCCACCCCGACCGCTACATGGCCGGCGGCGACATCCCTGCCGCGGCGTCCCTG
CTAAACATGGCGGTCGACGCGCTCTGCAAGGAGGGCCACCCGCGCGCGGCCGTGGAGCTC
TTCGAGCGGTGGCGCCGCGAGGAGCCCGACTCGCCACCAGATGAGCGGGCTTACAATATC
CTTCTCCACGGCTGGAGCCGCGCCGGCAGGCTCGACAAGGTGGGGAAACTCTGGGCCGAG
ATGCGCCTCGCCGGGGTGCGCCCGACGGTGGTCACGTATGGGACTCTCATCGAGGGGCTC
TGCGTGAAGCGCAGGCCAGACCAGGCGATTGCGCTTCTTGACGAGATGCGGGAAGAAGGG
ATCGAGGCCAATCTGCTTACTTGCAACCCCATTGTGTACGCTCTTGCGCAGGCCGGCCGA
TTCCAGGACGCCCACAAGGTGCTCGAGAAATTTCCTCTGTACGGTGTCGCGCCCAACATT
TCCACCTTCAACTCGCTCGTGATGGGCTATTGCAAGCATGGGGACCTTGCTGGGGCTAGC
AGTGTGCTCAAGGTGATGACAGAACGGGGCATTTCGCCGACCACAAGGACATACAATTAT
TTCTTCATGACCTTTGCCAAGAACAGCGATGTTGAGTCAGGGATGAATTTTTATAGCAAA
ATGATCGGTAATGGCTATTCACCAGATCAGCTTACTTATGTCCTCTTGGTCAAGATGTTG
TCCAGGGCGAACCGGCTTGAACTTGTGGTGCAAATGATACAGGAGATGAGAACTCATGGT
TTTGAGCCAGATTTGGCGACGAGTACCATGCTGATACATTTGCTTTGCCGGCGTCATCAA
TTTGAGGAGGCATGTGCTGAGTTTGAGGATATGTTTAAGAGAGGAATTGTGCCCCAGTAC
ATCACTTACCAGAAGCTTATGAGAGAGCTCAAGCGACTTGGTTTGGTTCATCTGATCCAA
AAGTTGACAAATTTAATGCGCTCAGTGCCACATTCTACAAAGTTACCAGGCAGCTATAGG
GATAAGGAAGGGGATGACTCCATGGAAAAGAGGAAATTGATATTGCAGAAAGCACAGGCT
GTTTCAGATGTTTTGAAGGAGTGTAAAGATCCAAAGGAGTTGGGCAAGCTCAAAGAAGAT
GAAGAGACTGATGTTGAGGTCGCAGATAGGTTAGTAGCCAACATTAGAAGAAGTGTATAT
GGGGGTGCCTCAACGAGCTCTGTAATGGCACCTCTTTCTTGAATATGGAGTTGCAAAAAT
GAAAATCATAAAGATAAGGGACATGATTGCATGTGAGGGGATTTACTGATAGATTGCATT
GTTCATCTCAGAAGTTGACCACCTAAATGATTCGTGCACATGTTTACTGTTGTTGTTTGG
GCCCTTCAAGATAAAAGATAACAGAGAAGAGGTAGTGACATACTACTGTGGTTGTGGTTT
ACTGGATATTGTCCCATGAAGGAATTAGCTGGTTGATGTGTTTCTTGTTTTAGGGAAACA
TTGATATGGCAGTTATTTACTGATGTGCTCATCTGCAGATGTCTTGGATTGCTATGAGAC
CTGTGTATGCCTCATGCAGTGATATTGCATTGAATCAGGCAACTCAGGAAAAGATGATGC
CTCATTCGAAGTCTAACCAGTGAACATAGAATTGGTAGGACATTATTTAGCATGTGGCAG
CCCTTGGGTTTGGCCGCTTGTGCAACTCATATACACAAAATTTTCCATTGTGTAAAGAAT
TTTCCGTTGCTTTGTTGGTCGGATACTTCTTCAGATGCTGTTGTTAAATTGAGATCATTT
AGAAATCCCATTTCCTGTTAAACAAATAC