Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0505500-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:17565806:17567476:-1 gene:Os01g0505500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0505500-00)
Sequence

ATGCGCTGCCTCCGCCGCCCGGCAACCCACCTGCTCTGCTCCGCTCGGAGCGCCCACGCC
GGGAACGCCCCCAGGGTGCTCGACGAAATGCCCCTTCCGCCTCTCGCTCCATCACGCCGC
ACGACGACTCTGGTCCGCGCGCACCACCTGCTCGGCGCAATGCGCGGGCCGGGGTTCTGC
ACCACCGTGGGCTCAGAATCAGATGTGGAGCCGCGATTCACGGTGGTGCCGGGCGCCGCC
CAGGAGGGCCTTGCACCGGGCGTGTCCGAGGCGGCAGAAAGGGTCTGCCGCGTCGTGTCT
GCCCAGCCGGAGCATAGAATTGCGCCGGTGCTCGATGCTCTTGGGGTAACCGTCTCGCCG
CAGTTGGTGGCCGAGGTTCTCAAGAACCTAAGCAACGCTGGCATTCTTGCGCTTGCTTTC
TTCCGATGGGCAGAGAGGCAGCAAGGCTTCAGATACTCGGCCGAGGGATTCCATAATTTG
ATTGAGGCTCTCGGCAAGATCAAGCAGTTCAGGCTGGTGTGGAGCTTAGTGGAGGCCATG
CGGTGCCGGAGCTGTCTGTCCAAGGACACGTTCAAGATCATTGTCAGGAGGTATGCCCGG
GCCAGAAAGGTCAAGGAAGCTGTCGAGACATTTGAGAAGATGTCCAGTTTTGGGCTGAAA
ACAGACTTGTCAGATTACAACTGGCTGATTGATATATTGAGCAAGTCCAAGCAAGTGAAG
AAGGCGCACGCCATCTTCAAGGAGATGAAGAGAAAAGGTAGGTTCATACCTGATCTCAAG
ACATACACTGTCCTCATGGAAGGCTGGGGCCATGAGAAGGACTTGCTGATGCTCAAGGCA
GTGTACCAAGAAATGCTCGATGCAGGCATCAAGCCTGATGTCGTCGCGTACGGGATGCTA
ATCAGTGCATTTTGCAAGTCTGGCAAATGTGATGAGGCTATCAAGGTGTTTCATGAGATG
GAAGAGAGTGGTTGCATGCCAAGCCCTCATGTATATTGTATGCTTATCAACGGCCTCGGT
TCAATGGAGAGACTCGATGAAGCTTTGAAATACTTTCAGCTTTCTAAAGAAAGTGGGTTC
CCCATGGAGGTGCCTACGTGCAATGCAGTTATTGGGGCTTACTGCAGAGCCTTGGAGTTT
CATCATGCTTTCAAAATGGTTGATGAGATGAGAAAGAGTGGCATTGGCCCAAATACCCGT
ACCTATGATATTATTCTTAACCATCTTATAAAATCTGAGAAGATAGAAGAGGCTTATAAT
CTATTCCAGAGAATGGAGAGAGATGGCTGTGAGCCTGAGCTCAATACATATACAATGATG
GTCGGTATGTTCTGTAGCAATGAAAGAGTTGATATGGCCTTGAAGGTATGGAAGCAAATG
AAAGAGAAGGGTGTCCTACCCTGTATGCATATGTTTTCAGCGTTGATCAATGGGTTATGC
TTTGAGAACCGGCTGGAAGAAGCTTGTGTATATTTCCAGGAGATGTTAGACAAAGGAATT
AGGCCACCAGGTCAACTTTTTAGTAATCTGAAAGAAGCGCTTGTTGAAGGAGGCAGAATT
ACCTTGGCACAGGAGGTGACTCAAAGGTTGGAAATGTTACGGAGAACACCAATGCGTGGT
TGA

Peptide Sequence

PEP ID

Os01t0505500-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:17565806:17567476:-1 gene:Os01g0505500 transcript:Os01t0505500-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0505500-00)
Sequence

MRCLRRPATHLLCSARSAHAGNAPRVLDEMPLPPLAPSRRTTTLVRAHHLLGAMRGPGFC
TTVGSESDVEPRFTVVPGAAQEGLAPGVSEAAERVCRVVSAQPEHRIAPVLDALGVTVSP
QLVAEVLKNLSNAGILALAFFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAM
RCRSCLSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVK
KAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGML
ISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGF
PMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYN
LFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLC
FENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQRLEMLRRTPMRG

Transcript Sequence

Transcript ID

Os01t0505500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:17565806:17567476:-1 gene:Os01g0505500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0505500-00)
Sequence

ATGCGCTGCCTCCGCCGCCCGGCAACCCACCTGCTCTGCTCCGCTCGGAGCGCCCACGCC
GGGAACGCCCCCAGGGTGCTCGACGAAATGCCCCTTCCGCCTCTCGCTCCATCACGCCGC
ACGACGACTCTGGTCCGCGCGCACCACCTGCTCGGCGCAATGCGCGGGCCGGGGTTCTGC
ACCACCGTGGGCTCAGAATCAGATGTGGAGCCGCGATTCACGGTGGTGCCGGGCGCCGCC
CAGGAGGGCCTTGCACCGGGCGTGTCCGAGGCGGCAGAAAGGGTCTGCCGCGTCGTGTCT
GCCCAGCCGGAGCATAGAATTGCGCCGGTGCTCGATGCTCTTGGGGTAACCGTCTCGCCG
CAGTTGGTGGCCGAGGTTCTCAAGAACCTAAGCAACGCTGGCATTCTTGCGCTTGCTTTC
TTCCGATGGGCAGAGAGGCAGCAAGGCTTCAGATACTCGGCCGAGGGATTCCATAATTTG
ATTGAGGCTCTCGGCAAGATCAAGCAGTTCAGGCTGGTGTGGAGCTTAGTGGAGGCCATG
CGGTGCCGGAGCTGTCTGTCCAAGGACACGTTCAAGATCATTGTCAGGAGGTATGCCCGG
GCCAGAAAGGTCAAGGAAGCTGTCGAGACATTTGAGAAGATGTCCAGTTTTGGGCTGAAA
ACAGACTTGTCAGATTACAACTGGCTGATTGATATATTGAGCAAGTCCAAGCAAGTGAAG
AAGGCGCACGCCATCTTCAAGGAGATGAAGAGAAAAGGTAGGTTCATACCTGATCTCAAG
ACATACACTGTCCTCATGGAAGGCTGGGGCCATGAGAAGGACTTGCTGATGCTCAAGGCA
GTGTACCAAGAAATGCTCGATGCAGGCATCAAGCCTGATGTCGTCGCGTACGGGATGCTA
ATCAGTGCATTTTGCAAGTCTGGCAAATGTGATGAGGCTATCAAGGTGTTTCATGAGATG
GAAGAGAGTGGTTGCATGCCAAGCCCTCATGTATATTGTATGCTTATCAACGGCCTCGGT
TCAATGGAGAGACTCGATGAAGCTTTGAAATACTTTCAGCTTTCTAAAGAAAGTGGGTTC
CCCATGGAGGTGCCTACGTGCAATGCAGTTATTGGGGCTTACTGCAGAGCCTTGGAGTTT
CATCATGCTTTCAAAATGGTTGATGAGATGAGAAAGAGTGGCATTGGCCCAAATACCCGT
ACCTATGATATTATTCTTAACCATCTTATAAAATCTGAGAAGATAGAAGAGGCTTATAAT
CTATTCCAGAGAATGGAGAGAGATGGCTGTGAGCCTGAGCTCAATACATATACAATGATG
GTCGGTATGTTCTGTAGCAATGAAAGAGTTGATATGGCCTTGAAGGTATGGAAGCAAATG
AAAGAGAAGGGTGTCCTACCCTGTATGCATATGTTTTCAGCGTTGATCAATGGGTTATGC
TTTGAGAACCGGCTGGAAGAAGCTTGTGTATATTTCCAGGAGATGTTAGACAAAGGAATT
AGGCCACCAGGTCAACTTTTTAGTAATCTGAAAGAAGCGCTTGTTGAAGGAGGCAGAATT
ACCTTGGCACAGGAGGTGACTCAAAGGTTGGAAATGTTACGGAGAACACCAATGCGTGGT
TGAGTAATCAAGCACATAACGTAAGACGGCATCTTAGCTCTTTTGACTCTT