Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0504500-02
CDS Infomation	cds chromosome:IRGSP-1.0:1:17504553:17512305:-1 gene:Os01g0504500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transparent testa 12 protein. (Os01t0504500-01);Multi antimicrobial extrusion protein MatE family protein. (Os01t0504500-02)
Sequence	ATGGGCTCCTCCGACTCCCAGGCGCCGCTGCTGCTCCCGAGGGGGAGCCACCGCAAGGAG GAGGAGGAGGAGGAATACGCGGCGGCGGGGAAGGTGCGGGGCTGCTGCGGCGGCGATGGG GAAGGAGGGTGGTGGCGGGAGGCGACTGCGGAGGCCGGGAGGCTGGCGTCGCTGGCCGCG CCGATGATCGCGGTCGCGCTGCTGCAGCTGATGATGCAGCTCATCTCCACCGTCATGGTG GGGCACCTCGGCGAGGTCGCGCTCGCCGGCGCCGCTATCGCCAACTCCCTCACCAACGTC TCCGGCTTCAGCGTCCTCATGGGACTGGCATGTGGGCTGGAAACTATTTGCGGACAGGCT TATGGAGCAGAACAGTATCATAAGCTAGCTTTATATATGTACAGGTCCATAATTGTGCTT CTTGTTGTGAGTGTACCAATCGCCATCATATGGGTTTTCATCCCAGAGGTACTTCCTCTC ATAGGTCAGCAACCAGAAATAGCAAGTGAAGTTGGGAAGTATGCATTGTGGCTAATCCCT GGTTTATTTGCCTTCACTGTTGCTCAATGCTTATCAAAGTTCCTCCAGACTCAAAGCCTA ATATTTCCTATGGTTCTAAGCTCATCAATAACACTAGCACTCTTCATTCCTTTGTGTTGG TTCATGGTTTATAAAGTTGGGATGGGTAATGCTGGAGCTGCTTTATCAGTCAGTATCTGT GATTGGGTCGAAGTGACTGTTCTTGGTCTTTACATTGTTCTCTCACCTTCTTGTGAAAAA ACTCGTGCTCCACTCACATGGGAAGCATTTAGTGGGATTGGAAGTTTCTTGAGGTTGGCT GTACCATCGGCCCTCATGATTTGCCTCGAATGGTGGTCTTATGAGCTGCTTGTTCTGCTT TCTGGGATCCTACCAAATCCAGCACTTGAAACTTCTGTGCTTTCTATATGCATTTCTACT GTTGTGTTGGTGTACAATCTCCCTCATGGTATTGGAACAGCTGCAAGTGTCCGTGTCTCA AATGAACTAGGTGCAGGGAATCCAGAAGGTGCCCGCTTGGTAGTAGGGGTTGCTTTATCT GTTATACTTTGTTCAGCAGTCCTAGTGAGTGTAACACTTCTAGCGTTGCGTCATTTCATC GGAATTGCTTTCAGCAATGAGGAAGAAGTCATAAATTATGTAACAAGAATGGTACCTGTT CTTTCCATCTCAGTTATTACAGACAGCCTTCAGGGTGTCCTCTCAGGTGTTTCCAGGGGC TGTGGATGGCAGCATCTAGGGGCCTATGTTAACCTAGGTGCATTCTATCTTGTCGGAGTT CCTGTTGCTCTCTTTTTTGGGTTTGCAATGCATCTAGGAGGAATGGGTTTTTGGATGGGC ATGGTAGCTGGTGGAGCGACACAGGTCACTCTTCTATCTATCATTACTGCAATGACAAAC TGGAGAAAGATGGCTGAAAAGGCTAGGGACAGAGTATTTGAGGAAAGGATTCCGACACAG TCAGTCTAA

Peptide Sequence

PEP ID	Os01t0504500-02
PEP Infomation	pep chromosome:IRGSP-1.0:1:17504553:17512305:-1 gene:Os01g0504500 transcript:Os01t0504500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transparent testa 12 protein. (Os01t0504500-01);Multi antimicrobial extrusion protein MatE family protein. (Os01t0504500-02)
Sequence	MGSSDSQAPLLLPRGSHRKEEEEEEYAAAGKVRGCCGGDGEGGWWREATAEAGRLASLAA PMIAVALLQLMMQLISTVMVGHLGEVALAGAAIANSLTNVSGFSVLMGLACGLETICGQA YGAEQYHKLALYMYRSIIVLLVVSVPIAIIWVFIPEVLPLIGQQPEIASEVGKYALWLIP GLFAFTVAQCLSKFLQTQSLIFPMVLSSSITLALFIPLCWFMVYKVGMGNAGAALSVSIC DWVEVTVLGLYIVLSPSCEKTRAPLTWEAFSGIGSFLRLAVPSALMICLEWWSYELLVLL SGILPNPALETSVLSICISTVVLVYNLPHGIGTAASVRVSNELGAGNPEGARLVVGVALS VILCSAVLVSVTLLALRHFIGIAFSNEEEVINYVTRMVPVLSISVITDSLQGVLSGVSRG CGWQHLGAYVNLGAFYLVGVPVALFFGFAMHLGGMGFWMGMVAGGATQVTLLSIITAMTN WRKMAEKARDRVFEERIPTQSV

Transcript Sequence

Transcript ID	Os01t0504500-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:17504553:17512305:-1 gene:Os01g0504500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transparent testa 12 protein. (Os01t0504500-01);Multi antimicrobial extrusion protein MatE family protein. (Os01t0504500-02)
Sequence	GCGTCGCTCCCGTCCCGTGCCGTGCGCTGCGGCCGCCATGGGCTCCTCCGACTCCCAGGC GCCGCTGCTGCTCCCGAGGGGGAGCCACCGCAAGGAGGAGGAGGAGGAGGAATACGCGGC GGCGGGGAAGGTGCGGGGCTGCTGCGGCGGCGATGGGGAAGGAGGGTGGTGGCGGGAGGC GACTGCGGAGGCCGGGAGGCTGGCGTCGCTGGCCGCGCCGATGATCGCGGTCGCGCTGCT GCAGCTGATGATGCAGCTCATCTCCACCGTCATGGTGGGGCACCTCGGCGAGGTCGCGCT CGCCGGCGCCGCTATCGCCAACTCCCTCACCAACGTCTCCGGCTTCAGCGTCCTCATGGG ACTGGCATGTGGGCTGGAAACTATTTGCGGACAGGCTTATGGAGCAGAACAGTATCATAA GCTAGCTTTATATATGTACAGGTCCATAATTGTGCTTCTTGTTGTGAGTGTACCAATCGC CATCATATGGGTTTTCATCCCAGAGGTACTTCCTCTCATAGGTCAGCAACCAGAAATAGC AAGTGAAGTTGGGAAGTATGCATTGTGGCTAATCCCTGGTTTATTTGCCTTCACTGTTGC TCAATGCTTATCAAAGTTCCTCCAGACTCAAAGCCTAATATTTCCTATGGTTCTAAGCTC ATCAATAACACTAGCACTCTTCATTCCTTTGTGTTGGTTCATGGTTTATAAAGTTGGGAT GGGTAATGCTGGAGCTGCTTTATCAGTCAGTATCTGTGATTGGGTCGAAGTGACTGTTCT TGGTCTTTACATTGTTCTCTCACCTTCTTGTGAAAAAACTCGTGCTCCACTCACATGGGA AGCATTTAGTGGGATTGGAAGTTTCTTGAGGTTGGCTGTACCATCGGCCCTCATGATTTG CCTCGAATGGTGGTCTTATGAGCTGCTTGTTCTGCTTTCTGGGATCCTACCAAATCCAGC ACTTGAAACTTCTGTGCTTTCTATATGCATTTCTACTGTTGTGTTGGTGTACAATCTCCC TCATGGTATTGGAACAGCTGCAAGTGTCCGTGTCTCAAATGAACTAGGTGCAGGGAATCC AGAAGGTGCCCGCTTGGTAGTAGGGGTTGCTTTATCTGTTATACTTTGTTCAGCAGTCCT AGTGAGTGTAACACTTCTAGCGTTGCGTCATTTCATCGGAATTGCTTTCAGCAATGAGGA AGAAGTCATAAATTATGTAACAAGAATGGTACCTGTTCTTTCCATCTCAGTTATTACAGA CAGCCTTCAGGGTGTCCTCTCAGGTGTTTCCAGGGGCTGTGGATGGCAGCATCTAGGGGC CTATGTTAACCTAGGTGCATTCTATCTTGTCGGAGTTCCTGTTGCTCTCTTTTTTGGGTT TGCAATGCATCTAGGAGGAATGGGTTTTTGGATGGGCATGGTAGCTGGTGGAGCGACACA GGTCACTCTTCTATCTATCATTACTGCAATGACAAACTGGAGAAAGATGGCTGAAAAGGC TAGGGACAGAGTATTTGAGGAAAGGATTCCGACACAGTCAGTCTAACCACATTGACTAAG TTTTGTTGGATTCAATCTTCAAATTTTTCCTGTACGGTACATGTTCTTTTTTTTTTTCTT GAGGATTAGTAACAGAATGGCAAATGAATCCTGTAGCATCTTAGCTCGAAGAGTTAGTCA AGTCCCAGGAAGACTTGAAAGATGTGATGTTACATCTTTTTTACTTCTCTGTAGGAAAGC ATATATAATCTTTGTGTTGAACAAGGAGCAAAGTATACTGG