Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0502400-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:17394305:17404420:1 gene:Os01g0502400 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os01t0502400-01)
Sequence

ATGGCTCTAGACGGCCCCGCGGAGCGACGGGACGAGGCCCAGGCCGCGATGGGTAATGGC
AACGGCGTGGCCCCGCCGCCGTTGCGGCCGGCCGGCCGGCCCTCCGGGGCGCCGGCGTGC
GCAGATCGGCGGCTGCGGTTGAACCCCAACATGGAGCACAAGCCGCAGGACTACAGCGAC
GTCCGCGGCGAGTACGCACCAGCTGTATACAGTGCACTTGAGAGGCACCTCCCACCCAGT
GTCCTTGATGCCAACCGGGAAATCAAGCTGCAGCTCATGCGAGAGGTCCTCGGGCACTAT
TGGCCCCATGGTGAGCGCAACAAGGTTCAAAGGCACAGAGAATACAGACAGAGAATACTC
AACCATTATAAGCCACTTCATAAAGAGCTATACAAAATGCGCCCTTCATCGTTCTTTTTA
CCAACATTCCTTGAAGCTATTAGGACCAATACAGAAGAAAGCTTTAGAAGCATTATGACT
GAGCCAGTTCCTGGTGTTTATTCATTTGCTATGTTACAGCCTAATTTTTGTGAGATGCTA
TTACAGGAGGTAGAGAACTTCGAAAAATGGGTCCACACAATGAAATTTAAGATAATGAGG
CCAAATACAATGAACAAGTATGGTGCTGTCCTTGATGATTTTGGCCTGGAAGTTATGCTG
AACCAATTCATGGAACAGTTCATAGCTCCAATGTCTACAGTATTATATCCTGAGGTTGGT
GGAGGAACATTAGATACACACCATGCTTTTGTTGTTGAGTATGGGAAAGACAGGGATGTT
GAACTCGGTTTCCACGTTGACGATTCTGAGGTTACATTGAATGTTTGCCTTGGCAAGCAA
TTCTCTGGTGGTGAGTTATACTTTCGTGGCATCCGTTGTGAGAATCATGTGAATTCAGAG
ACACAGCATGAGGAAATGTTCGATTACTCTCATGTTCCTGGACGAGCTGTGCTCCATCGT
GGTCGTCATAGGCATGGTGCCCGACCGACATCATCTGGGCTCAGAATCAATCTTCTTTTG
TGGTGCAGAAGCTCTGTGTTCAGGGAGATGAAGAAATATCAGAAGGACTTTTCGGGCTGG
TGTGGTGAATGTAAACGTGAGAAGAAGGAGAGGCAGATTCATGCTGTTAAAGCAACTAAG
CTGGCGTTTCTTAGGGGTGCTGGAGGGGCAACGATTTAA

Peptide Sequence

PEP ID

Os01t0502400-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:17394305:17404420:1 gene:Os01g0502400 transcript:Os01t0502400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os01t0502400-01)
Sequence

MALDGPAERRDEAQAAMGNGNGVAPPPLRPAGRPSGAPACADRRLRLNPNMEHKPQDYSD
VRGEYAPAVYSALERHLPPSVLDANREIKLQLMREVLGHYWPHGERNKVQRHREYRQRIL
NHYKPLHKELYKMRPSSFFLPTFLEAIRTNTEESFRSIMTEPVPGVYSFAMLQPNFCEML
LQEVENFEKWVHTMKFKIMRPNTMNKYGAVLDDFGLEVMLNQFMEQFIAPMSTVLYPEVG
GGTLDTHHAFVVEYGKDRDVELGFHVDDSEVTLNVCLGKQFSGGELYFRGIRCENHVNSE
TQHEEMFDYSHVPGRAVLHRGRHRHGARPTSSGLRINLLLWCRSSVFREMKKYQKDFSGW
CGECKREKKERQIHAVKATKLAFLRGAGGATI

Transcript Sequence

Transcript ID

Os01t0502400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:17394305:17404420:1 gene:Os01g0502400 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os01t0502400-01)
Sequence

AATCCAGTGTCATTTGACTCATTTCCTCTTCCTGCCCTCGGGGAGTACGTGAGGACCTAA
AAGTACCTCGCCCCCAAACCCTAGAACCCCACACCACACCCAATTCGCCCACCCAAACCC
TAGTCCTCCCGATGCTGTGATCCGCCGCGCGTGCCCCATGGCTCTAGACGGCCCCGCGGA
GCGACGGGACGAGGCCCAGGCCGCGATGGGTAATGGCAACGGCGTGGCCCCGCCGCCGTT
GCGGCCGGCCGGCCGGCCCTCCGGGGCGCCGGCGTGCGCAGATCGGCGGCTGCGGTTGAA
CCCCAACATGGAGCACAAGCCGCAGGACTACAGCGACGTCCGCGGCGAGTACGCACCAGC
TGTATACAGTGCACTTGAGAGGCACCTCCCACCCAGTGTCCTTGATGCCAACCGGGAAAT
CAAGCTGCAGCTCATGCGAGAGGTCCTCGGGCACTATTGGCCCCATGGTGAGCGCAACAA
GGTTCAAAGGCACAGAGAATACAGACAGAGAATACTCAACCATTATAAGCCACTTCATAA
AGAGCTATACAAAATGCGCCCTTCATCGTTCTTTTTACCAACATTCCTTGAAGCTATTAG
GACCAATACAGAAGAAAGCTTTAGAAGCATTATGACTGAGCCAGTTCCTGGTGTTTATTC
ATTTGCTATGTTACAGCCTAATTTTTGTGAGATGCTATTACAGGAGGTAGAGAACTTCGA
AAAATGGGTCCACACAATGAAATTTAAGATAATGAGGCCAAATACAATGAACAAGTATGG
TGCTGTCCTTGATGATTTTGGCCTGGAAGTTATGCTGAACCAATTCATGGAACAGTTCAT
AGCTCCAATGTCTACAGTATTATATCCTGAGGTTGGTGGAGGAACATTAGATACACACCA
TGCTTTTGTTGTTGAGTATGGGAAAGACAGGGATGTTGAACTCGGTTTCCACGTTGACGA
TTCTGAGGTTACATTGAATGTTTGCCTTGGCAAGCAATTCTCTGGTGGTGAGTTATACTT
TCGTGGCATCCGTTGTGAGAATCATGTGAATTCAGAGACACAGCATGAGGAAATGTTCGA
TTACTCTCATGTTCCTGGACGAGCTGTGCTCCATCGTGGTCGTCATAGGCATGGTGCCCG
ACCGACATCATCTGGGCTCAGAATCAATCTTCTTTTGTGGTGCAGAAGCTCTGTGTTCAG
GGAGATGAAGAAATATCAGAAGGACTTTTCGGGCTGGTGTGGTGAATGTAAACGTGAGAA
GAAGGAGAGGCAGATTCATGCTGTTAAAGCAACTAAGCTGGCGTTTCTTAGGGGTGCTGG
AGGGGCAACGATTTAAATTATATTTGCTTTATGTATTTATACAATCTTGTATTATATTAT
ACTTTACTGTCATTTGGGAAGCAGCTAGTGTGATCTTCAGTTTTTCTGGTCACAATCATT
AGTGGTCACAGGTGTATGTAAATTGAACTTGTGATCAAATCAAGCTGAAACTTAGTGGAG
GATCGCATGTTAGTGTGAAAGGAGTGCTAGCAGAATAGCAACTCCCCCCTTCAATATCGT
CTAAGCCTGATATTGTACAGATAAGTGCATCTGCATAGAATGTTCTAATCTGTCATCAAA
TTTGGGTGATGCAACCTTTTAT