Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0495900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:17012671:17016236:1 gene:Os01g0495900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CRS2-associated factor 1. (Os01t0495900-01)
Sequence

ATGGCAACTAGCCACCTCACCTCTCGCTCCCTCCTCGTCCAAGCCCAGTACCCCATCTCA
CGGCTCCCATCCAACCTCCGCCTCTCCCTCTCCCACCACAAGCAACCAGCCGCCGTCGCC
AAGCGCCGCCGAGCCCCCGCCCCCTCCCACCCGGCCTTCTCTTCGGTCATCCGCGGCCGT
CCCAAGAAAGTCCCCATCCCGGAAAACGGCGAGCCAGCCGCCGGTGTCCGCGTCACTGAA
CGTGGCCTGGCCTATCATCTTGACGGCGCGCCCTTCGAGTTCCAGTACAGTTACACAGAG
ACGCCGCGCGCGCGCCCCGTCGCGCTCCGCGAGGCCCCGTTCCTGCCGTTCGGGCCTGAG
GTAACGCCGCGCCCATGGACCGGGAGGAAGCCGCTCCCCAAGAGCCGCAAGGAACTGCCT
GAGTTCGACTCCTTCATGCTCCCGCCGCCGGGCAAGAAGGGGGTGAAGCCCGTGCAGTCG
CCGGGGCCATTCCTTGCCGGCACGGAGCCGAGGTACCAAGCGGCGTCCAGGGAGGAGGTC
CTCGGGGAGCCTCTCACAAAGGAGGAGGTCGACGAGCTCGTCAAGGCGACCCTCAAGACC
AAGCGGCAGCTTAATATCGGTAGAGATGGTCTAACACACAATATGTTGGAGAACATTCAT
TCGCATTGGAAGAGGAAGAGAGTGTGCAAGATAAAATGCAAAGGTGTATGCACGGTTGAT
ATGGATAATGTCTGCCAGCAGCTAGAGGAGAAAGTTGGAGGAAAAGTAATTCATCATCAG
GGTGGTGTGATATTTCTCTTTCGTGGTAGAAACTACAATTACAGAACTCGCCCAATCTAT
CCACTTATGCTTTGGAAACCTGCTGCACCAGTGTACCCCCGCTTGGTTAAAAAGATCCCA
GACGGCTTAACTCCAGATGAGGCAGAAGATATGCGCAAGAGAGGACGTCAGTTACCACCA
ATTTGCAAACTCGGAAAAAATGGTGTTTATCTTAACCTCGTGAAGCAAGTTCGAGAAGCA
TTTGAAGCATGTGATCTTGTCCGGGTTGATTGCTCAGGTCTTAATAAAAGTGATTGCAGA
AAGATAGGAGCTAAACTTAAGGATCTAGTTCCCTGTACCTTACTGTCTTTTGAGTTTGAA
CATATACTGATGTGGAGAGGAAATGATTGGAAATCATCCCTTCCTCCATTAGAAGAAAAT
GATTTTAAAGTGGCGAGCGACCAAATTTTGAATAGCAAAGAAGCAGGTTCTGGAAGTGCT
CTGACCCCAATTGAGCTGGTCAACAATGCCACGTCTCTCAAGAAATGCAACTTGATTGAA
GGTGCAGAAAAATTGGAAGATTCCATGAAGTCTAGTTTTGAAAATGGTATGATTTTGGGT
TCTGCATGTGGAAACCCTGGAGTATGCAACTCTGAAGGTATAGATGGAACTGAGTCCTCA
GCTGATGCTCCAATTGAATTTTCTCCTTCAAATTCAGCAAGGGATTTAGATCCATCTCAA
ACATCAACATTGTATTGCCAAAGCTCCCTATTGGACAAGAGTGAAAATGGAGAGCTCATT
GAGATGTACCCTGACAGATGTGGAAACTCGGAACAATCTCCAGATGTACCAGAAGCTTTA
ACTTGTCTAATGGGCAGCAGTGATGAGATTCATGAATTGGAAACTATGAGGAGAAACTGC
AAACATTTAAACGGCAGCGATGGTGTTAACAGTGATTCCATAGTCCCTTCCTACATGGAA
GGAATTTTACTCCTTTTCAAACAAGCCATTGACAGTGGCATGGCACTCGTGCTGAATGAA
AATGAGTTTGCTGATGCCAATTATGTGTATCAAAAGTCTGTTGCTTTTACAAAGACGGCT
CCACGATACCTGGTACTCCGGCATACACCAAGGAAGTCCCATGGTACCCAGAAGACTGAG
CCAGCCAAGAATGTAAGGATAAATAAGCATCTTGAAGAACATAAAGTATCTGATCATGTC
AAAAAGAAAGAAATTGTCATGGGAGGATCAAGAATGCAGAGAAATGATCACGCACGAGAA
TTTCTATCAGATGTTGTTCCACAGGGTACCTTAAGAGTAGATGAACTTGCTAAATTACTG
GCTTAA

Peptide Sequence

PEP ID

Os01t0495900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:17012671:17016236:1 gene:Os01g0495900 transcript:Os01t0495900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CRS2-associated factor 1. (Os01t0495900-01)
Sequence

MATSHLTSRSLLVQAQYPISRLPSNLRLSLSHHKQPAAVAKRRRAPAPSHPAFSSVIRGR
PKKVPIPENGEPAAGVRVTERGLAYHLDGAPFEFQYSYTETPRARPVALREAPFLPFGPE
VTPRPWTGRKPLPKSRKELPEFDSFMLPPPGKKGVKPVQSPGPFLAGTEPRYQAASREEV
LGEPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVD
MDNVCQQLEEKVGGKVIHHQGGVIFLFRGRNYNYRTRPIYPLMLWKPAAPVYPRLVKKIP
DGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDCR
KIGAKLKDLVPCTLLSFEFEHILMWRGNDWKSSLPPLEENDFKVASDQILNSKEAGSGSA
LTPIELVNNATSLKKCNLIEGAEKLEDSMKSSFENGMILGSACGNPGVCNSEGIDGTESS
ADAPIEFSPSNSARDLDPSQTSTLYCQSSLLDKSENGELIEMYPDRCGNSEQSPDVPEAL
TCLMGSSDEIHELETMRRNCKHLNGSDGVNSDSIVPSYMEGILLLFKQAIDSGMALVLNE
NEFADANYVYQKSVAFTKTAPRYLVLRHTPRKSHGTQKTEPAKNVRINKHLEEHKVSDHV
KKKEIVMGGSRMQRNDHAREFLSDVVPQGTLRVDELAKLLA

Transcript Sequence

Transcript ID

Os01t0495900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:17012671:17016236:1 gene:Os01g0495900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CRS2-associated factor 1. (Os01t0495900-01)
Sequence

ATCCTGTTCCCCAACACCCATGGCAACTAGCCACCTCACCTCTCGCTCCCTCCTCGTCCA
AGCCCAGTACCCCATCTCACGGCTCCCATCCAACCTCCGCCTCTCCCTCTCCCACCACAA
GCAACCAGCCGCCGTCGCCAAGCGCCGCCGAGCCCCCGCCCCCTCCCACCCGGCCTTCTC
TTCGGTCATCCGCGGCCGTCCCAAGAAAGTCCCCATCCCGGAAAACGGCGAGCCAGCCGC
CGGTGTCCGCGTCACTGAACGTGGCCTGGCCTATCATCTTGACGGCGCGCCCTTCGAGTT
CCAGTACAGTTACACAGAGACGCCGCGCGCGCGCCCCGTCGCGCTCCGCGAGGCCCCGTT
CCTGCCGTTCGGGCCTGAGGTAACGCCGCGCCCATGGACCGGGAGGAAGCCGCTCCCCAA
GAGCCGCAAGGAACTGCCTGAGTTCGACTCCTTCATGCTCCCGCCGCCGGGCAAGAAGGG
GGTGAAGCCCGTGCAGTCGCCGGGGCCATTCCTTGCCGGCACGGAGCCGAGGTACCAAGC
GGCGTCCAGGGAGGAGGTCCTCGGGGAGCCTCTCACAAAGGAGGAGGTCGACGAGCTCGT
CAAGGCGACCCTCAAGACCAAGCGGCAGCTTAATATCGGTAGAGATGGTCTAACACACAA
TATGTTGGAGAACATTCATTCGCATTGGAAGAGGAAGAGAGTGTGCAAGATAAAATGCAA
AGGTGTATGCACGGTTGATATGGATAATGTCTGCCAGCAGCTAGAGGAGAAAGTTGGAGG
AAAAGTAATTCATCATCAGGGTGGTGTGATATTTCTCTTTCGTGGTAGAAACTACAATTA
CAGAACTCGCCCAATCTATCCACTTATGCTTTGGAAACCTGCTGCACCAGTGTACCCCCG
CTTGGTTAAAAAGATCCCAGACGGCTTAACTCCAGATGAGGCAGAAGATATGCGCAAGAG
AGGACGTCAGTTACCACCAATTTGCAAACTCGGAAAAAATGGTGTTTATCTTAACCTCGT
GAAGCAAGTTCGAGAAGCATTTGAAGCATGTGATCTTGTCCGGGTTGATTGCTCAGGTCT
TAATAAAAGTGATTGCAGAAAGATAGGAGCTAAACTTAAGGATCTAGTTCCCTGTACCTT
ACTGTCTTTTGAGTTTGAACATATACTGATGTGGAGAGGAAATGATTGGAAATCATCCCT
TCCTCCATTAGAAGAAAATGATTTTAAAGTGGCGAGCGACCAAATTTTGAATAGCAAAGA
AGCAGGTTCTGGAAGTGCTCTGACCCCAATTGAGCTGGTCAACAATGCCACGTCTCTCAA
GAAATGCAACTTGATTGAAGGTGCAGAAAAATTGGAAGATTCCATGAAGTCTAGTTTTGA
AAATGGTATGATTTTGGGTTCTGCATGTGGAAACCCTGGAGTATGCAACTCTGAAGGTAT
AGATGGAACTGAGTCCTCAGCTGATGCTCCAATTGAATTTTCTCCTTCAAATTCAGCAAG
GGATTTAGATCCATCTCAAACATCAACATTGTATTGCCAAAGCTCCCTATTGGACAAGAG
TGAAAATGGAGAGCTCATTGAGATGTACCCTGACAGATGTGGAAACTCGGAACAATCTCC
AGATGTACCAGAAGCTTTAACTTGTCTAATGGGCAGCAGTGATGAGATTCATGAATTGGA
AACTATGAGGAGAAACTGCAAACATTTAAACGGCAGCGATGGTGTTAACAGTGATTCCAT
AGTCCCTTCCTACATGGAAGGAATTTTACTCCTTTTCAAACAAGCCATTGACAGTGGCAT
GGCACTCGTGCTGAATGAAAATGAGTTTGCTGATGCCAATTATGTGTATCAAAAGTCTGT
TGCTTTTACAAAGACGGCTCCACGATACCTGGTACTCCGGCATACACCAAGGAAGTCCCA
TGGTACCCAGAAGACTGAGCCAGCCAAGAATGTAAGGATAAATAAGCATCTTGAAGAACA
TAAAGTATCTGATCATGTCAAAAAGAAAGAAATTGTCATGGGAGGATCAAGAATGCAGAG
AAATGATCACGCACGAGAATTTCTATCAGATGTTGTTCCACAGGGTACCTTAAGAGTAGA
TGAACTTGCTAAATTACTGGCTTAAAGGTGATCGGTCCTTTATTAACCGAAGGTGTGTTG
CGTTATCAACCTTGAATTAACGTGCAAAGTATATACATGTACATTGATATGGGACGTATA
AAACTTTTCGTC