Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0390600-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:16495359:16503329:1 gene:Os01g0390600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0390600-01)
Sequence	ATGACCACCCGCGCCGGCGCACCTCTCGCCGTCTTCCTCGTCTCGTCCCTCAAGTCGGCC GCCGCACGCCTCAGCCACGGCGAGCAGCTCCACGCGCTCGCTGCCAAGTCGGGCCTGCTC ACCTCCAATCTTTTCGTCCGCAACTCCCTCCTCGCCTTCTACTCCCGCGTCGCCCCCAGC CTCGCCTACCACCTGTTCGATGAAATACCCCCGCTCCTCCGCGACGCCACCGCCCACAAC ATTCTCCTCTCCGCGCTCGCCCGCGCGGGCCGCCTCGAACGCGCGCAGTGCCTGCTCGCG GAGATGCCTCAGAGGGACGCGGTCTCGTTCACCACTGTCATTTCCGCCCTCTCGCGCTCC GGTCATCCTGAGCGCGCCCTGGCCGTCTTCCGCGATATGCTCACCGAGGCCGTGCAGCCC AACGAGGTTACACTTGCGGAAGTGCTCACGGCGATGGCCTGTGACCACGGGGCACCAGCA CCAGTTGGTGCTGCCCATGGCGTTGCCGTGCGGCGTGGGCTTGATGGATTTGTCATCGTG GCCACCAACCTGGTCCATGCATATGGAGCAGTGTCACAGGTTCCTTCTGCCCGTTCCATA TTCGAGCTAATGCCAGATAGAAACACTGTCACTTGGAATACAATGCTTAATTGCTATGTC AAGGCAGGAATGATTAACATGGCTGCTGAGGTGTTCGGTGTGATCCCAGAGAGGGATGAG GTCTCTTGGTTGACAATGATAGATGGATATATGTGTGCGGATTTCCTACTGCAGGCTCTC AGGACATATGTTGCGATGGTGGGTACGGTGGGCATAAGGGCCAATGAGGTGATACTTGTT GGTTTGGTCAAGGCATGTTCTCGACATTCCGCTGTCTCAGAAGGGCAACAACTCCACACA GTCATTCTAAAGAATGGTTTTGACGCTCATGCATTTGTACAGGCTACCCTGATCCATTAT TACGGGTCTTGTGATTTTATTGACCATGCCCAGATGCAATTCAAATTGTCAGACAAGTCA CACGTAGCTTCCTGGAATGCCCTTATGGCTAGCCTACTAAGAAGGAATCTAGTGCATGAA GCAAGGCAGCTGTTCGATGACATGCCTGAGAGGGACACCATTTCTTGGAGTACATTGATA TCTGGGTATGTCCAGAGTGGGAATTCAAACATGGCTTTGCAGATATTCTGTTCGATGCTA GATGCTGGTGTTGAACCTAATGAGATCACTTTAGCAAGTGCTCTGTCTGCAGTAGCCAAT TCTGGCACCTTGGGGCAAGCAAGATGGATCCATGACTACATAATCAGCAGATCAATCCAG CTTACTGATAAACTGAGCGCTGGACTGATTAACGTGTATGCAAAGTGTGGTAGCATTGCT GAAGCAGTTCAGCTATTTAACCATGTTAAGGATAAGTCAATTTCAGTGTCTCCTTGGAAT TCTATCATCTGTAATTTAGCTATCCATGGCTATGTGAACATGTCGCTGGAATTGTTTTCA CAGTTGCAAAGCACCACCCATATTAAACCCAACTCAATCACATACCTTGGTGTGTTAAAT GCATGTTGTCATGCTGGGATGGTAGCTGAGGGGAAGCGCCAATTTGAGTCCATGAGGCAA CAATATGGAATCCAACCAGAAATTAAGCACTATGGTTGCATGGTCGATCTTCTTTGTCGA GCTGGGTATTTGGAAGAAGCAGAACTGCTTATTAAGACGATGCCAATGAAAGCTGATGTG GTAGCCTGGGGTTGTATCCTTGCAGCTGCAAGGACTCAAGGAAATGTAGCCTTAGGAGAA AAGGCTGCAGAAGAATTGTCAAAGCTTGACCCAAGCCATGGAGCATCCAAAATAGCCTTG TCAAACCTCTATGCTGATGCTGGTCATTGGAGCAATGTGTCAGTGGTGAGGAAGGAACTC CAGAATGAGAATTTGGAAAGACTTACAGGAAGCAGTGGAATTCTACAATTATAG

Peptide Sequence

PEP ID	Os01t0390600-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:16495359:16503329:1 gene:Os01g0390600 transcript:Os01t0390600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0390600-01)
Sequence	MTTRAGAPLAVFLVSSLKSAAARLSHGEQLHALAAKSGLLTSNLFVRNSLLAFYSRVAPS LAYHLFDEIPPLLRDATAHNILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISALSRS GHPERALAVFRDMLTEAVQPNEVTLAEVLTAMACDHGAPAPVGAAHGVAVRRGLDGFVIV ATNLVHAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMINMAAEVFGVIPERDE VSWLTMIDGYMCADFLLQALRTYVAMVGTVGIRANEVILVGLVKACSRHSAVSEGQQLHT VILKNGFDAHAFVQATLIHYYGSCDFIDHAQMQFKLSDKSHVASWNALMASLLRRNLVHE ARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLDAGVEPNEITLASALSAVAN SGTLGQARWIHDYIISRSIQLTDKLSAGLINVYAKCGSIAEAVQLFNHVKDKSISVSPWN SIICNLAIHGYVNMSLELFSQLQSTTHIKPNSITYLGVLNACCHAGMVAEGKRQFESMRQ QYGIQPEIKHYGCMVDLLCRAGYLEEAELLIKTMPMKADVVAWGCILAAARTQGNVALGE KAAEELSKLDPSHGASKIALSNLYADAGHWSNVSVVRKELQNENLERLTGSSGILQL

Transcript Sequence

Transcript ID	Os01t0390600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:16495359:16503329:1 gene:Os01g0390600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0390600-01)
Sequence	AAATGTAACTAGTCTCTTCTTACCGGAATCCCCACACCTTCTCGCCACGGTCCGACGCGC AAGCGCGGCGGCGCTCGCTCTCGCGGTTCTCGGTGACGGCGGCCTCGTCCCACTCCCGCC CGGGGATGAACGGCACCCCGTTGCGTTGCCATCTCTAGTCGCGCATGACCACCCGCGCCG GCGCACCTCTCGCCGTCTTCCTCGTCTCGTCCCTCAAGTCGGCCGCCGCACGCCTCAGCC ACGGCGAGCAGCTCCACGCGCTCGCTGCCAAGTCGGGCCTGCTCACCTCCAATCTTTTCG TCCGCAACTCCCTCCTCGCCTTCTACTCCCGCGTCGCCCCCAGCCTCGCCTACCACCTGT TCGATGAAATACCCCCGCTCCTCCGCGACGCCACCGCCCACAACATTCTCCTCTCCGCGC TCGCCCGCGCGGGCCGCCTCGAACGCGCGCAGTGCCTGCTCGCGGAGATGCCTCAGAGGG ACGCGGTCTCGTTCACCACTGTCATTTCCGCCCTCTCGCGCTCCGGTCATCCTGAGCGCG CCCTGGCCGTCTTCCGCGATATGCTCACCGAGGCCGTGCAGCCCAACGAGGTTACACTTG CGGAAGTGCTCACGGCGATGGCCTGTGACCACGGGGCACCAGCACCAGTTGGTGCTGCCC ATGGCGTTGCCGTGCGGCGTGGGCTTGATGGATTTGTCATCGTGGCCACCAACCTGGTCC ATGCATATGGAGCAGTGTCACAGGTTCCTTCTGCCCGTTCCATATTCGAGCTAATGCCAG ATAGAAACACTGTCACTTGGAATACAATGCTTAATTGCTATGTCAAGGCAGGAATGATTA ACATGGCTGCTGAGGTGTTCGGTGTGATCCCAGAGAGGGATGAGGTCTCTTGGTTGACAA TGATAGATGGATATATGTGTGCGGATTTCCTACTGCAGGCTCTCAGGACATATGTTGCGA TGGTGGGTACGGTGGGCATAAGGGCCAATGAGGTGATACTTGTTGGTTTGGTCAAGGCAT GTTCTCGACATTCCGCTGTCTCAGAAGGGCAACAACTCCACACAGTCATTCTAAAGAATG GTTTTGACGCTCATGCATTTGTACAGGCTACCCTGATCCATTATTACGGGTCTTGTGATT TTATTGACCATGCCCAGATGCAATTCAAATTGTCAGACAAGTCACACGTAGCTTCCTGGA ATGCCCTTATGGCTAGCCTACTAAGAAGGAATCTAGTGCATGAAGCAAGGCAGCTGTTCG ATGACATGCCTGAGAGGGACACCATTTCTTGGAGTACATTGATATCTGGGTATGTCCAGA GTGGGAATTCAAACATGGCTTTGCAGATATTCTGTTCGATGCTAGATGCTGGTGTTGAAC CTAATGAGATCACTTTAGCAAGTGCTCTGTCTGCAGTAGCCAATTCTGGCACCTTGGGGC AAGCAAGATGGATCCATGACTACATAATCAGCAGATCAATCCAGCTTACTGATAAACTGA GCGCTGGACTGATTAACGTGTATGCAAAGTGTGGTAGCATTGCTGAAGCAGTTCAGCTAT TTAACCATGTTAAGGATAAGTCAATTTCAGTGTCTCCTTGGAATTCTATCATCTGTAATT TAGCTATCCATGGCTATGTGAACATGTCGCTGGAATTGTTTTCACAGTTGCAAAGCACCA CCCATATTAAACCCAACTCAATCACATACCTTGGTGTGTTAAATGCATGTTGTCATGCTG GGATGGTAGCTGAGGGGAAGCGCCAATTTGAGTCCATGAGGCAACAATATGGAATCCAAC CAGAAATTAAGCACTATGGTTGCATGGTCGATCTTCTTTGTCGAGCTGGGTATTTGGAAG AAGCAGAACTGCTTATTAAGACGATGCCAATGAAAGCTGATGTGGTAGCCTGGGGTTGTA TCCTTGCAGCTGCAAGGACTCAAGGAAATGTAGCCTTAGGAGAAAAGGCTGCAGAAGAAT TGTCAAAGCTTGACCCAAGCCATGGAGCATCCAAAATAGCCTTGTCAAACCTCTATGCTG ATGCTGGTCATTGGAGCAATGTGTCAGTGGTGAGGAAGGAACTCCAGAATGAGAATTTGG AAAGACTTACAGGAAGCAGTGGAATTCTACAATTATAGGTTTTAGAAATATAGCTCCCTC AAGGAACAATAATTCTTATAGACTTTGACACAGTAGGGCATATTTCGGTCTTCAGCTTCA CATATGAACATTAGGTTACAAGAAACTCAATTGTCAGCAAATAAAATATCCAAACTATTG TCAACAAGACAGAGATGATATTTTCAATTATTATGGAATTTTTTGCAATTTGAAATCTTG GCCGGTTATTATCAGAGAATATATGGGCAAGTGCTTCTCCTGAATGTGATGCATGCATGT ATGGTTTAATTCCAGTTTTACTTTGCCTCCTGGCTCCTGGCGTAGCAGCAGTACATTTTC TATGGAAGATAAAGCTTGAGAACAAAATTAATATGCTGTGATGCTGGATGGAAGATCACA TGATCAAGTTGGCAGCATAGAGGTGACGTACAGAGGCAAGGAAGTCGGAGGCGCTGTGCA TATGCAACGTTTTCATTTCTATGTTAATTTTCATTGTTTTGGTTAATACCATGTGATCTC TAATCTAATTAGTGTGGGACCAAGCCAAAGACCAGGCACCCTATATATGGGTCTAGGCCG ATTGGAAACAGACAATACACAATCAATCGATACAAAATTCCTGTC