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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0389700-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:16435858:16436778:1 gene:Os01g0389700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF679 family protein. (Os01t0389700-01)
Sequence

ATGGCGGCATCTCCTCCGGGCGCCATCGTGATCAACATGGCATCGAACACCAACGGCGAG
TCCACGGCGGTGACGACCAATAACTTAGCTCCGTCGACGCCTAAGGCCGTCGATGAGTCC
ACGACGTCGTCGAAAACAGATGTGGCCACGAAGACGGTGACCGACAAGGTGATGGCAAGC
ACGGCGAACCTGGCGCAGCTGCTGCCGACGGGGACGGTGCTGGCTTACCAGGCGCTGTCG
CCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCGTGCTG
GTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCGGCCAA
GACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACATGTCC
CGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGAC
TTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGG
CTGCAGAACTGCTTCTTCGGGCAGAATCCTGGCGGCAACACCAAGGAGCTCCTCAAGAAC
CTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCAAGAGG
AAGGGCATCGGATACAACGACAATACACCCAACCGCAAGGCCGAGGATGTAACTAAAAAT
TAA

Peptide Sequence

PEP ID

Os01t0389700-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:16435858:16436778:1 gene:Os01g0389700 transcript:Os01t0389700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF679 family protein. (Os01t0389700-01)
Sequence

MAASPPGAIVINMASNTNGESTAVTTNNLAPSTPKAVDESTTSSKTDVATKTVTDKVMAS
TANLAQLLPTGTVLAYQALSPSFTNHGECNAANKWLTAVLVGVLAGLSLFFSFTDSVVGQ
DGKLYYGVATRRGLNVFNMSREEEEAKKLSHSELRLRPLDFVHSFFTAMVFLTVAFSDVG
LQNCFFGQNPGGNTKELLKNLPLGMAFLSSFVFLIFPTKRKGIGYNDNTPNRKAEDVTKN

Transcript Sequence

Transcript ID

Os01t0389700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:16435858:16436778:1 gene:Os01g0389700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF679 family protein. (Os01t0389700-01)
Sequence

ATATATCTCTCTTCAGTCTTCACCAGTTGATTAATTACTACGACGCCGCATCAAAAGCTC
CAGCAATGGCGGCATCTCCTCCGGGCGCCATCGTGATCAACATGGCATCGAACACCAACG
GCGAGTCCACGGCGGTGACGACCAATAACTTAGCTCCGTCGACGCCTAAGGCCGTCGATG
AGTCCACGACGTCGTCGAAAACAGATGTGGCCACGAAGACGGTGACCGACAAGGTGATGG
CAAGCACGGCGAACCTGGCGCAGCTGCTGCCGACGGGGACGGTGCTGGCTTACCAGGCGC
TGTCGCCGTCCTTCACCAACCACGGCGAGTGCAACGCCGCCAACAAGTGGCTCACCGCCG
TGCTGGTCGGCGTCCTGGCCGGCCTCTCCCTCTTCTTCTCCTTCACGGACAGCGTCGTCG
GCCAAGACGGCAAGCTCTACTACGGCGTGGCGACACGGCGGGGATTGAACGTGTTCAACA
TGTCCCGGGAAGAGGAGGAAGCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGC
TGGACTTCGTGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATG
TCGGGCTGCAGAACTGCTTCTTCGGGCAGAATCCTGGCGGCAACACCAAGGAGCTCCTCA
AGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGATCTTCCCGACCA
AGAGGAAGGGCATCGGATACAACGACAATACACCCAACCGCAAGGCCGAGGATGTAACTA
AAAATTAAATTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAAAAAT
TTCTTGTTAGAATATATATATAATGTAATTAACAAGTATTTGATTGGAGATCAGTTAATT
AAATTATGTCTTGTATTAATT