Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0374900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:15453686:15457657:1 gene:Os01g0374900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0374900-01)
Sequence

ATGGGCAACATCGCGAGCAGCGGCGGCGCTAGCCCACGTCCGCCGCCGCCGCATCTCGAA
GCCTATAGACACGGGGTGCCGCCCCCGTACTACCACAGCTACCCTCGTCCGCCCCCCGGC
GCCGCCGCGCCGCCGCCGGTGCCGGTGCCTGCGCACGTGGAGCGGCACAGGGCCGTGGCG
GTCAGCGTCGGCGTCAACGTCAAGGGGGACACCCTGCGGCTGGTGCCCGACGACGACGAC
GACGATGGCCGCAGCCTACTCCTCGCCTTCTCCTTCGACGCCGATGGCCCCGGAAGCATA
ACTGTCTGCTTCTTTGCACAAGAAGATAAGTGTGCCTTGAAGACCGCAAAGGAAAATTTG
CTTCAACCTGTGACCGTGCCTTTTAAGGAAGGTCGAGGTCAGGAGTTCAAGCAACCAAGT
GGGTCGGGAATCGATGTCTCTCGTTTTGAGGAATCTGAGCTAACTAATGTTGGGGAAGGT
GGTGTATTCCCTGTAGCATTCAAAGTACAAATGGATGTGTCAGGCAACCAAGAATCAGAA
GGGGCACATGAGACCGAACAATCGAAATATCTTGTTAAATATGCTATATTTGTGAAGAAA
GACAATGCTGAATATGGAGTTCATGTTGTGCAGCAGATCCTTTGGGTAAATGGAATCAGA
TATGTCTTGCAGGAAATATATGGTATTGGGAACACAGCTGATAAGAATGCTCATGAGGAT
GATTCCGGGAAAGAATGTGTGGTTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCA
TGCAGGCATATGTGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAA
TGCCCAATATGCAGGCAACCTGTTGAGGGCCTTCGCGAGATAGAGGTTGATAACAAACCG
ATTCCCCAACAAGGATCTCAGCAGTTAACAGCACCTCAATAA

Peptide Sequence

PEP ID

Os01t0374900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:15453686:15457657:1 gene:Os01g0374900 transcript:Os01t0374900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0374900-01)
Sequence

MGNIASSGGASPRPPPPHLEAYRHGVPPPYYHSYPRPPPGAAAPPPVPVPAHVERHRAVA
VSVGVNVKGDTLRLVPDDDDDDGRSLLLAFSFDADGPGSITVCFFAQEDKCALKTAKENL
LQPVTVPFKEGRGQEFKQPSGSGIDVSRFEESELTNVGEGGVFPVAFKVQMDVSGNQESE
GAHETEQSKYLVKYAIFVKKDNAEYGVHVVQQILWVNGIRYVLQEIYGIGNTADKNAHED
DSGKECVVCLSEPRDTAVLPCRHMCLCRECAQVLKYQTNKCPICRQPVEGLREIEVDNKP
IPQQGSQQLTAPQ

Transcript Sequence

Transcript ID

Os01t0374900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:15453686:15457657:1 gene:Os01g0374900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0374900-01)
Sequence

GACTTCCACCCAGACTTCCAGACTCCAGAGGCGAGGGCTTCCCAATGGGCAACATCGCGA
GCAGCGGCGGCGCTAGCCCACGTCCGCCGCCGCCGCATCTCGAAGCCTATAGACACGGGG
TGCCGCCCCCGTACTACCACAGCTACCCTCGTCCGCCCCCCGGCGCCGCCGCGCCGCCGC
CGGTGCCGGTGCCTGCGCACGTGGAGCGGCACAGGGCCGTGGCGGTCAGCGTCGGCGTCA
ACGTCAAGGGGGACACCCTGCGGCTGGTGCCCGACGACGACGACGACGATGGCCGCAGCC
TACTCCTCGCCTTCTCCTTCGACGCCGATGGCCCCGGAAGCATAACTGTCTGCTTCTTTG
CACAAGAAGATAAGTGTGCCTTGAAGACCGCAAAGGAAAATTTGCTTCAACCTGTGACCG
TGCCTTTTAAGGAAGGTCGAGGTCAGGAGTTCAAGCAACCAAGTGGGTCGGGAATCGATG
TCTCTCGTTTTGAGGAATCTGAGCTAACTAATGTTGGGGAAGGTGGTGTATTCCCTGTAG
CATTCAAAGTACAAATGGATGTGTCAGGCAACCAAGAATCAGAAGGGGCACATGAGACCG
AACAATCGAAATATCTTGTTAAATATGCTATATTTGTGAAGAAAGACAATGCTGAATATG
GAGTTCATGTTGTGCAGCAGATCCTTTGGGTAAATGGAATCAGATATGTCTTGCAGGAAA
TATATGGTATTGGGAACACAGCTGATAAGAATGCTCATGAGGATGATTCCGGGAAAGAAT
GTGTGGTTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATGTGCC
TGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGCCCAATATGCAGGC
AACCTGTTGAGGGCCTTCGCGAGATAGAGGTTGATAACAAACCGATTCCCCAACAAGGAT
CTCAGCAGTTAACAGCACCTCAATAAAGTCTCATCTGATTGCAAGCAAACTACCTGTACA
TGTGTCATGTGTATATAAAAGGTCTGTGCTTTCGGGAAGGGGAAATCGGAAGTTACCTGG
TAGCAACAAAGCTGTTTCTGATATTTTGTTAAAGGATGAACCTACTGGGATTTAATTGTC
TACGTTTGGACCACCAAACTCGACTTATTACTTGGAAAAGACACTATTTTAGATTGTATG
GTTCAAGCCTTTTGCAGGGGACAATCGTTTTCTTGTTCTAATTTAGTTACTCATCCATCA
CTTTGATGTGTTTAAGAGCATACGATGTGTTCTTTCTAGTGG