Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0367900-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:15075863:15083305:-1 gene:Os01g0367900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Possible global transcription activator SNF2L1 (SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 1). (Os01t0367900-01)
Sequence	ATGGCGAAGCCGGTGAAGTACGACGAGGAGGAGGAGGAGGTCTCGTCCTCCGGCGAGGAG GAGGAGGAGCAGTCGGACGGCGCCGGGTCCGGATCTGGCGAGGAGGAGGATGAGGAGGAG GAGGAGGCGCCCGCGGCGGCGGCCGGCGAGGCGGCTGGTGGGGAAGAGGAGGAGGTGGAT GAGGAGGAGATCGAAGCCGTCACCACCGGTGCCGGCGCCGACGAGGAAGAGGAGGAAAGC GGTGCGGCCGCCGCCGCCCCCGGGGAGGGCGATGAGGAGTCGCAGTCCACTGAGGACGAC GAGGCCGTCGTGGGGGAGGACGACGACGCAGATGAGGCTGAAGGAGGTGCAGTAGTAGGG AAACGTGAGAAAGCCAGGCTCAAGGAAATGCAGAAATTGAAGAAGCAGAAAATACAAGAA ATATTGGATACACAGAATGCTGCAGTTGATGCTGACATGAACAATAAAGGGAAAGGACGA TTGAAGTACCTACTGCAGCAAACTGAAATATTTGCACATTTTGCCAAAGGGAACCAATCA AAAGAGAAGAAACCGCGTGGAAGGGGACGCCATGCCTCAAAGATGACAGAAGAGGAGGAA GATGAAGAATACCTTAAAGAAGAGGAAGATGCCCTTGCTGGTTCAGGGGGAACACGCTTG CTTTCACAGCCTTCATGTATAAAGGGGAAGATGCGAGACTACCAACTAGCTGGGCTTAAT TGGCTCATACGGTTGTACGAGAATGGTATCAATGGTATATTGGCTGATGAAATGGGTCTT GGGAAAACTCTTCAAACTATTTCGCTGCTGGGCTATCTGCATGAATTCAGGGGAATAACT GGTCCGCACATGGTTGTTGCACCAAAGTCTACTCTTGGCAACTGGATAAAGGAAATTCAA CGGTTTTGCCCTATTCTACGTGCTGTGAAATTCTTAGGGAATCCAGAAGAGAGGAACCAT ATAAGGGAGAACCTATTGCAGCCAGGAAAATTTGATGTGTGTGTCACTAGTTTTGAAATG GCAATCAAAGAAAAAACTACACTGAAGCGTTTCAGCTGGCGTTACATTATTATTGATGAA GCACATCGCATAAAAAATGAGAATTCTCTTCTGTCCAAGACAATGAGGATTTATAATACT AATTATCGTCTCCTTATCACAGGCACACCACTCCAGAATAATCTCCATGAGCTTTGGTCT CTCCTCAACTTCTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTT CAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGGTTCTTCGC CCATTTCTTCTTCGAAGGCTTAAATCTGATGTTGAAAAGGGATTACCCCCCAAAAAGGAA ACTATCCTTAAGGTTGGAATGTCTCAGATGCAAAAGCAGTACTATCGTGCCCTGCTTCAG AAAGATTTGGAGGTTATTAATGCTGGTGGTGAACGCAAAAGATTGCTTAACATAGCCATG CAGTTGCGCAAGTGCTGCAACCATCCATATTTATTCCAAGGAGCAGAACCTGGTCCACCT TACACAACTGGTGAACATCTAGTTGAGAATGCTGGAAAAATGGTTCTGTTAGATAAATTG CTGCCCAAACTGAAGGATCGTGATTCTAGGGTGCTCATTTTCTCACAGATGACCAGGCTT TTGGATATATTGGAAGATTATCTTATGTACAGAGGCTATCAGTATTGCCGGATAGATGGA AATACTGGTGGAGAAGATCGTGATGCATCCATTGAAGCTTTCAACAAACCAGGCAGTGAA AAGTTTGTTTTTTTGCTTTCAACCAGGGCTGGTGGCCTTGGCATCAACCTTGCTACTGCT GATGTTGTGGTTCTTTATGATAGTGATTGGAATCCACAAGCTGATCTGCAAGCTCAAGAC CGTGCACATAGGATAGGTCAGAAGAAAGAAGTTCAAGTTTTCCGATTTTGCACTGAGTAT ACCATCGAGGAGAAAGTGATTGAGAGGGCATACAAGAAGCTTGCATTGGATGCTTTGGTC ATTCAACAAGGCCGACTGGCAGAGCAGAAGACTGTCAATAAGGATGATCTGTTGCAAATG GTAAGATTTGGTGCGGAAATGGTATTCAGTTCCAAGGACAGCACAATTACAGATGAGGAT ATTGACCGTATCATAGCTAAAGGAGAGGAAACAACAGCTGAGCTTGATGCAAAAATGAAA AAGTTCACAGAGGATGCTATTAAATTTAAAATGGATGACACTGCGGAATTGTATGATTTT GATGATGATAAGGAGGAAAACAAGCTTGATTTTAAGAAACTGGTCAGTGATAACTGGATA GAGCCACCTAGAAGAGAAAGGAAGAGAAACTACTCTGAGTCTGAATACTTTAAGCAAGCA CTTCGCCAAGGTGCACCTGCAAAACCTAGGGAACCACGAATTCCAAGAATGCCGCACCTA CATGATTTCCAGTTCTTCAACAACCAAAGGCTCAATGAATTGTATGAAAAGGAAGTCCGG TACCTTATGCAAGCAAACCAGAAGAAAGATACTATTGATGGTGAAGATGAAGATCAGCTG GAGCCTTTGACTGCGGAGGAGCAGGAAGAGAAAGAGCAGTTGTTAGAAGAGGGTTTTGCA ACATGGACGAGGAGAGACTTCAACACATTTATTCGTGCATGTGAGAAGTATGGTCGAAAT GATATTAGGAGTATTGCCGCTGAAATGGAGGGGAAGACAGAGGAGGAAGTTCAACGATAT GCTAAAGTTTTCAAGGAGAGATACAAGGAACTGAGTGATTATGATAGAATTATCAAGAAT ATTGAAAGGGGAGAGGCCAGGATATCACGGAAGGATGAAATTATGAGAGCCATCGGGAAG AAGTTAGACCGCTATAAGAATCCATGGTTAGAGTTGAAAATCCAGTATGGACAGAACAAA GGGAAGTTCTATAATGAGGAATGCGACCGTTTTATGCTTTGCATGGTGCATAAGCTTGGT TATGGAAACTGGGATGAACTGAAAGCTGCCTTCCGCATGTCGCCTTTGTTCCGATTTGAT TGGTTTGTCAAGTCCAGAACCACCCAGGAGTTGGCTAGGAGATGTGATACCCTTATCCGT CTAGTTGAGAAAGAGAATCAGGAATATGATGAGCAAGAAAGGCAGGCAAGGAAGGACAAA AGGATGGCTAAGAACATGACACCGACAAAGCGATCTGCGTTAAGGGTTTCAGAAGGTGAA ACTACTCCATCGAATTCTTTCAAGAGGCGACGCCAGTCCCTTATGGATGACTATGTGGGC TCGGGAAGGCGTAAGCGAGGTTGA

Peptide Sequence

PEP ID	Os01t0367900-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:15075863:15083305:-1 gene:Os01g0367900 transcript:Os01t0367900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Possible global transcription activator SNF2L1 (SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 1). (Os01t0367900-01)
Sequence	MAKPVKYDEEEEEVSSSGEEEEEQSDGAGSGSGEEEDEEEEEAPAAAAGEAAGGEEEEVD EEEIEAVTTGAGADEEEEESGAAAAAPGEGDEESQSTEDDEAVVGEDDDADEAEGGAVVG KREKARLKEMQKLKKQKIQEILDTQNAAVDADMNNKGKGRLKYLLQQTEIFAHFAKGNQS KEKKPRGRGRHASKMTEEEEDEEYLKEEEDALAGSGGTRLLSQPSCIKGKMRDYQLAGLN WLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWIKEIQ RFCPILRAVKFLGNPEERNHIRENLLQPGKFDVCVTSFEMAIKEKTTLKRFSWRYIIIDE AHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF QISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQ KDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENAGKMVLLDKL LPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGSE KFVFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEY TIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDED IDRIIAKGEETTAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKEENKLDFKKLVSDNWI EPPRRERKRNYSESEYFKQALRQGAPAKPREPRIPRMPHLHDFQFFNNQRLNELYEKEVR YLMQANQKKDTIDGEDEDQLEPLTAEEQEEKEQLLEEGFATWTRRDFNTFIRACEKYGRN DIRSIAAEMEGKTEEEVQRYAKVFKERYKELSDYDRIIKNIERGEARISRKDEIMRAIGK KLDRYKNPWLELKIQYGQNKGKFYNEECDRFMLCMVHKLGYGNWDELKAAFRMSPLFRFD WFVKSRTTQELARRCDTLIRLVEKENQEYDEQERQARKDKRMAKNMTPTKRSALRVSEGE TTPSNSFKRRRQSLMDDYVGSGRRKRG

Transcript Sequence

Transcript ID	Os01t0367900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:15075863:15083305:-1 gene:Os01g0367900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Possible global transcription activator SNF2L1 (SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 1). (Os01t0367900-01)
Sequence	ATCGCTCGGTCCTTCGAACCCCCACCGCCTCCGTCGACACATTCCGCGCTCGAATCGAAT CTACGAAACCCTAGCCCGCCACCGCCGCCCCAATGGCGAAGCCGGTGAAGTACGACGAGG AGGAGGAGGAGGTCTCGTCCTCCGGCGAGGAGGAGGAGGAGCAGTCGGACGGCGCCGGGT CCGGATCTGGCGAGGAGGAGGATGAGGAGGAGGAGGAGGCGCCCGCGGCGGCGGCCGGCG AGGCGGCTGGTGGGGAAGAGGAGGAGGTGGATGAGGAGGAGATCGAAGCCGTCACCACCG GTGCCGGCGCCGACGAGGAAGAGGAGGAAAGCGGTGCGGCCGCCGCCGCCCCCGGGGAGG GCGATGAGGAGTCGCAGTCCACTGAGGACGACGAGGCCGTCGTGGGGGAGGACGACGACG CAGATGAGGCTGAAGGAGGTGCAGTAGTAGGGAAACGTGAGAAAGCCAGGCTCAAGGAAA TGCAGAAATTGAAGAAGCAGAAAATACAAGAAATATTGGATACACAGAATGCTGCAGTTG ATGCTGACATGAACAATAAAGGGAAAGGACGATTGAAGTACCTACTGCAGCAAACTGAAA TATTTGCACATTTTGCCAAAGGGAACCAATCAAAAGAGAAGAAACCGCGTGGAAGGGGAC GCCATGCCTCAAAGATGACAGAAGAGGAGGAAGATGAAGAATACCTTAAAGAAGAGGAAG ATGCCCTTGCTGGTTCAGGGGGAACACGCTTGCTTTCACAGCCTTCATGTATAAAGGGGA AGATGCGAGACTACCAACTAGCTGGGCTTAATTGGCTCATACGGTTGTACGAGAATGGTA TCAATGGTATATTGGCTGATGAAATGGGTCTTGGGAAAACTCTTCAAACTATTTCGCTGC TGGGCTATCTGCATGAATTCAGGGGAATAACTGGTCCGCACATGGTTGTTGCACCAAAGT CTACTCTTGGCAACTGGATAAAGGAAATTCAACGGTTTTGCCCTATTCTACGTGCTGTGA AATTCTTAGGGAATCCAGAAGAGAGGAACCATATAAGGGAGAACCTATTGCAGCCAGGAA AATTTGATGTGTGTGTCACTAGTTTTGAAATGGCAATCAAAGAAAAAACTACACTGAAGC GTTTCAGCTGGCGTTACATTATTATTGATGAAGCACATCGCATAAAAAATGAGAATTCTC TTCTGTCCAAGACAATGAGGATTTATAATACTAATTATCGTCTCCTTATCACAGGCACAC CACTCCAGAATAATCTCCATGAGCTTTGGTCTCTCCTCAACTTCTTGTTGCCTGAAATAT TTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGG AGGTTGTTCAACAGCTTCATAAGGTTCTTCGCCCATTTCTTCTTCGAAGGCTTAAATCTG ATGTTGAAAAGGGATTACCCCCCAAAAAGGAAACTATCCTTAAGGTTGGAATGTCTCAGA TGCAAAAGCAGTACTATCGTGCCCTGCTTCAGAAAGATTTGGAGGTTATTAATGCTGGTG GTGAACGCAAAAGATTGCTTAACATAGCCATGCAGTTGCGCAAGTGCTGCAACCATCCAT ATTTATTCCAAGGAGCAGAACCTGGTCCACCTTACACAACTGGTGAACATCTAGTTGAGA ATGCTGGAAAAATGGTTCTGTTAGATAAATTGCTGCCCAAACTGAAGGATCGTGATTCTA GGGTGCTCATTTTCTCACAGATGACCAGGCTTTTGGATATATTGGAAGATTATCTTATGT ACAGAGGCTATCAGTATTGCCGGATAGATGGAAATACTGGTGGAGAAGATCGTGATGCAT CCATTGAAGCTTTCAACAAACCAGGCAGTGAAAAGTTTGTTTTTTTGCTTTCAACCAGGG CTGGTGGCCTTGGCATCAACCTTGCTACTGCTGATGTTGTGGTTCTTTATGATAGTGATT GGAATCCACAAGCTGATCTGCAAGCTCAAGACCGTGCACATAGGATAGGTCAGAAGAAAG AAGTTCAAGTTTTCCGATTTTGCACTGAGTATACCATCGAGGAGAAAGTGATTGAGAGGG CATACAAGAAGCTTGCATTGGATGCTTTGGTCATTCAACAAGGCCGACTGGCAGAGCAGA AGACTGTCAATAAGGATGATCTGTTGCAAATGGTAAGATTTGGTGCGGAAATGGTATTCA GTTCCAAGGACAGCACAATTACAGATGAGGATATTGACCGTATCATAGCTAAAGGAGAGG AAACAACAGCTGAGCTTGATGCAAAAATGAAAAAGTTCACAGAGGATGCTATTAAATTTA AAATGGATGACACTGCGGAATTGTATGATTTTGATGATGATAAGGAGGAAAACAAGCTTG ATTTTAAGAAACTGGTCAGTGATAACTGGATAGAGCCACCTAGAAGAGAAAGGAAGAGAA ACTACTCTGAGTCTGAATACTTTAAGCAAGCACTTCGCCAAGGTGCACCTGCAAAACCTA GGGAACCACGAATTCCAAGAATGCCGCACCTACATGATTTCCAGTTCTTCAACAACCAAA GGCTCAATGAATTGTATGAAAAGGAAGTCCGGTACCTTATGCAAGCAAACCAGAAGAAAG ATACTATTGATGGTGAAGATGAAGATCAGCTGGAGCCTTTGACTGCGGAGGAGCAGGAAG AGAAAGAGCAGTTGTTAGAAGAGGGTTTTGCAACATGGACGAGGAGAGACTTCAACACAT TTATTCGTGCATGTGAGAAGTATGGTCGAAATGATATTAGGAGTATTGCCGCTGAAATGG AGGGGAAGACAGAGGAGGAAGTTCAACGATATGCTAAAGTTTTCAAGGAGAGATACAAGG AACTGAGTGATTATGATAGAATTATCAAGAATATTGAAAGGGGAGAGGCCAGGATATCAC GGAAGGATGAAATTATGAGAGCCATCGGGAAGAAGTTAGACCGCTATAAGAATCCATGGT TAGAGTTGAAAATCCAGTATGGACAGAACAAAGGGAAGTTCTATAATGAGGAATGCGACC GTTTTATGCTTTGCATGGTGCATAAGCTTGGTTATGGAAACTGGGATGAACTGAAAGCTG CCTTCCGCATGTCGCCTTTGTTCCGATTTGATTGGTTTGTCAAGTCCAGAACCACCCAGG AGTTGGCTAGGAGATGTGATACCCTTATCCGTCTAGTTGAGAAAGAGAATCAGGAATATG ATGAGCAAGAAAGGCAGGCAAGGAAGGACAAAAGGATGGCTAAGAACATGACACCGACAA AGCGATCTGCGTTAAGGGTTTCAGAAGGTGAAACTACTCCATCGAATTCTTTCAAGAGGC GACGCCAGTCCCTTATGGATGACTATGTGGGCTCGGGAAGGCGTAAGCGAGGTTGATCGG GCGTTGCCTGCTGCTCCCTTTCAAGCTTGTCGGAAGTCTGGGAGAGCTTTGAAATGTGCG CGCTATGTGATGTTTAAAGCCTCTAGGCGCACTTAACTCATCGCTGAGGCCTAACTCAGT ATGATAGTGTAGTGGTATATAATACTATATGTTTTCTCTGCGGGGATTTCATGACCGCTC TGGCTAGCCTATGCATTAGGAATCAGATGTACTATGGATTATCCAACTTTGGTAGAGGTG AACTCATCGAAGCTACCCTTTTAAATCCCTATGCTTATGTTACATTGGCCAAAAGTCCGC TCCTAATCCGAGTATTCTATCTTCCGAGT