Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0358300-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:14506819:14513133:-1 gene:Os01g0358300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os01t0358300-01);Non-protein coding transcript. (Os01t0358300-03)
Sequence	ATGGCGGCCGCCGGAGCATCGGCTCTCCGGCCACACCTCGCCCTTCTCCCCGCCGGCGGC GGTGGAGGCGGAGGCGGCGGAACCCGTAGCTATGCCCTCCAAGCGCTATCCTTCGTCTCG CCCCTCCTCCCTCATTGCGGCCGACGACGCCGCTGCGTGCTCCGCTCCAAGGCCTCTTCG TCTCCGTCTCCCCCGCCATCGCCGGGGAAGGAGGCGGTGGCTGTCCCGACGGCGGAGTCG TGCGTCAACCTGGGACTCGAGCTCTTCTCCAAGGGCAGGGTGAAGGATGCTCTTGAACAA TTTGAGAATGCCCTAGAGCTGAATCCAAATCCTGTTGAAGCCCAAGCAGCACTATACAAT AAAGCATGCTGCCATGCATTTAGGGAAGAAAGCAACAAAGCTGCAGATTGCTTAAGGACA GCTCTGCGAGATTATAATCTCAAGTTTGGTACTATACTTAATGATCCTGACTTGGCACCG TTCAGGGCATCACCGGAATTCAAGGAACTTCAAGAAGAGGCATTGCGTGGTGGAGAAGAT ATTGGTTCTGGGTTCCGAAGAGACCTGAAACTCATTAGTGAAGTACAAGCACCATTTCGT GGTGTCCGAAGGTTCTTTTATGTGGCGTTAACTGCAGCAGCTGGAATTTCAACATTCTTT ACCATTCCTAGACTTATACTTGCAGTTCAAGGTGGCGATGGTGCCCCTGATCTGCTGGAA ACTGTTGGGAATGCTGCCATCAATATTGGAGGTATTGTTGTGCTCGTGGCTTTGTATTTC TGGGAAAACAAGAAAGAAGAGCAGCAGATCACACAAATTTCTCGCAATGAAACCCTTTCA AGGTTACCTGTCCGCCTGTCAACCAATCGCATTATTGAGCTTGTGCAACTCCGGGACATT ACTAGGCCAGTTATACTGGCAGGTTCAAAAGCATCCATTACTCGAGCAATGCAAAGAGCT GAGAGATATCGGACTGAACTGCTGAAACGAGGTGTTCTTCTAATTCCTGTGATCTTTGGT GCTTCTCAGAAAGCCCAAAGTAAGCCAAGAGGCTTTGGAAGTTCAAGATCTGCTGCATCA GCTCCTTCAGTTGGGGATGACTTTGAGAAGCGTACTGAATCTATTGCAGCGAAATCACGG TTAAAAGCTGAAGAGCGATTTAAGGCTGATATTGTCTCTCCTGAACAATGGGAAAGTTGG ATACGTGACCAGCAAGAGTCTGAAGGTGTCACTCCCGGTGAAGATGTCTATATAATCCTC CGATTGGATGGTCGTGTCAGAAGATCTGGAAGAGGCATGCCAAATTGGAACGACATATTG CAGGAACTTCCACGACTTGAAGAACTGCTGAGCAAACTTGAACGTTGA

Peptide Sequence

PEP ID	Os01t0358300-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:14506819:14513133:-1 gene:Os01g0358300 transcript:Os01t0358300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os01t0358300-01);Non-protein coding transcript. (Os01t0358300-03)
Sequence	MAAAGASALRPHLALLPAGGGGGGGGGTRSYALQALSFVSPLLPHCGRRRRCVLRSKASS SPSPPPSPGKEAVAVPTAESCVNLGLELFSKGRVKDALEQFENALELNPNPVEAQAALYN KACCHAFREESNKAADCLRTALRDYNLKFGTILNDPDLAPFRASPEFKELQEEALRGGED IGSGFRRDLKLISEVQAPFRGVRRFFYVALTAAAGISTFFTIPRLILAVQGGDGAPDLLE TVGNAAINIGGIVVLVALYFWENKKEEQQITQISRNETLSRLPVRLSTNRIIELVQLRDI TRPVILAGSKASITRAMQRAERYRTELLKRGVLLIPVIFGASQKAQSKPRGFGSSRSAAS APSVGDDFEKRTESIAAKSRLKAEERFKADIVSPEQWESWIRDQQESEGVTPGEDVYIIL RLDGRVRRSGRGMPNWNDILQELPRLEELLSKLER

Transcript Sequence

Transcript ID	Os01t0358300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:14506819:14513133:-1 gene:Os01g0358300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os01t0358300-01);Non-protein coding transcript. (Os01t0358300-03)
Sequence	ACCACCTCACCTCACGAAACCGGCAATGGCGGCCGCCGGAGCATCGGCTCTCCGGCCACA CCTCGCCCTTCTCCCCGCCGGCGGCGGTGGAGGCGGAGGCGGCGGAACCCGTAGCTATGC CCTCCAAGCGCTATCCTTCGTCTCGCCCCTCCTCCCTCATTGCGGCCGACGACGCCGCTG CGTGCTCCGCTCCAAGGCCTCTTCGTCTCCGTCTCCCCCGCCATCGCCGGGGAAGGAGGC GGTGGCTGTCCCGACGGCGGAGTCGTGCGTCAACCTGGGACTCGAGCTCTTCTCCAAGGG CAGGGTGAAGGATGCTCTTGAACAATTTGAGAATGCCCTAGAGCTGAATCCAAATCCTGT TGAAGCCCAAGCAGCACTATACAATAAAGCATGCTGCCATGCATTTAGGGAAGAAAGCAA CAAAGCTGCAGATTGCTTAAGGACAGCTCTGCGAGATTATAATCTCAAGTTTGGTACTAT ACTTAATGATCCTGACTTGGCACCGTTCAGGGCATCACCGGAATTCAAGGAACTTCAAGA AGAGGCATTGCGTGGTGGAGAAGATATTGGTTCTGGGTTCCGAAGAGACCTGAAACTCAT TAGTGAAGTACAAGCACCATTTCGTGGTGTCCGAAGGTTCTTTTATGTGGCGTTAACTGC AGCAGCTGGAATTTCAACATTCTTTACCATTCCTAGACTTATACTTGCAGTTCAAGGTGG CGATGGTGCCCCTGATCTGCTGGAAACTGTTGGGAATGCTGCCATCAATATTGGAGGTAT TGTTGTGCTCGTGGCTTTGTATTTCTGGGAAAACAAGAAAGAAGAGCAGCAGATCACACA AATTTCTCGCAATGAAACCCTTTCAAGGTTACCTGTCCGCCTGTCAACCAATCGCATTAT TGAGCTTGTGCAACTCCGGGACATTACTAGGCCAGTTATACTGGCAGGTTCAAAAGCATC CATTACTCGAGCAATGCAAAGAGCTGAGAGATATCGGACTGAACTGCTGAAACGAGGTGT TCTTCTAATTCCTGTGATCTTTGGTGCTTCTCAGAAAGCCCAAAGTAAGCCAAGAGGCTT TGGAAGTTCAAGATCTGCTGCATCAGCTCCTTCAGTTGGGGATGACTTTGAGAAGCGTAC TGAATCTATTGCAGCGAAATCACGGTTAAAAGCTGAAGAGCGATTTAAGGCTGATATTGT CTCTCCTGAACAATGGGAAAGTTGGATACGTGACCAGCAAGAGTCTGAAGGTGTCACTCC CGGTGAAGATGTCTATATAATCCTCCGATTGGATGGTCGTGTCAGAAGATCTGGAAGAGG CATGCCAAATTGGAACGACATATTGCAGGAACTTCCACGACTTGAAGAACTGCTGAGCAA ACTTGAACGTTGATGAAGGTGTGTATACAACTGCAGTTTGATCATCCATATGTTTCTCCA TTGTATTATTAATTCCCTAATCTATGTATAGACCATACCAATGTAATTTTGAGGGAAAAT TTTGTTTATGCCACTAATATATGAATTCCCAACTTCTGACGT