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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0358100-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:14486394:14487138:-1 gene:Os01g0358100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RAPID ALKALIZATION FACTOR 6 description:Rapid ALkalinization Factor family protein. (Os01t0358100-01)
Sequence

ATGGCGAGACCCGCCATCGTGGCGGCGCCCGCGCTGCTGCTGCTGGCGCTGCTCATCGCG
CTGGCCACCGGGGGAGCCGACGCGGCGCCGGGCGAGGTGCCGCTGAGCTGGGAGCTCGGG
GTTGTCGGCGCCGACGACGCGTTCGGCTTCCCGGGTGAGGAGGCGGCGGACAGCGCCACC
GCGGTGGTGCGGCGGGTGCTGCAGCAGGGGAGCTACATCAGCTACGGCGCGCTGCGGCGC
GACACGACGCCGTGCTCCGTGCGCGGCGCGTCCTACTACAACTGCCAGCCCGGCGCGGAG
GCCAACCCCTACTCCCGCGGCTGCTCCGCCATCACCCAGTGCAGGGGATGA

Peptide Sequence

PEP ID

Os01t0358100-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:14486394:14487138:-1 gene:Os01g0358100 transcript:Os01t0358100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RAPID ALKALIZATION FACTOR 6 description:Rapid ALkalinization Factor family protein. (Os01t0358100-01)
Sequence

MARPAIVAAPALLLLALLIALATGGADAAPGEVPLSWELGVVGADDAFGFPGEEAADSAT
AVVRRVLQQGSYISYGALRRDTTPCSVRGASYYNCQPGAEANPYSRGCSAITQCRG

Transcript Sequence

Transcript ID

Os01t0358100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:14486394:14487138:-1 gene:Os01g0358100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RAPID ALKALIZATION FACTOR 6 description:Rapid ALkalinization Factor family protein. (Os01t0358100-01)
Sequence

AAGCAACCAATTCCTCCTCCTCCTCCTCCTCCCTCCTCCTCTTCCTCCTCCTCCGCGTCG
AGCGCCATGGCGAGACCCGCCATCGTGGCGGCGCCCGCGCTGCTGCTGCTGGCGCTGCTC
ATCGCGCTGGCCACCGGGGGAGCCGACGCGGCGCCGGGCGAGGTGCCGCTGAGCTGGGAG
CTCGGGGTTGTCGGCGCCGACGACGCGTTCGGCTTCCCGGGTGAGGAGGCGGCGGACAGC
GCCACCGCGGTGGTGCGGCGGGTGCTGCAGCAGGGGAGCTACATCAGCTACGGCGCGCTG
CGGCGCGACACGACGCCGTGCTCCGTGCGCGGCGCGTCCTACTACAACTGCCAGCCCGGC
GCGGAGGCCAACCCCTACTCCCGCGGCTGCTCCGCCATCACCCAGTGCAGGGGATGATCC
ATCCATCCAGCTGCCACCACCAAAACTGTTGAAATTGGGATTTGTGATTCAAAGTTCGTC
TCGTCTACTCTATACATATTTTGTTTATTTTTGTCTTCTTTTATTGTTCGTCTCCTTTTG
AAATGTGAACGAATTGGTAGGGATTGGTGCCCGCTAATCTAAAGTCAAGAGAGATGTACA
CTGTACATGTGTCCGGTACTCCTACTCTGTATCAATTATAAATAAATCGTGTATTCTCCT
AATTTGATGGATGGATTCATCAATTCATCATTCATGGATGATTAGCTGTCCTGTCCTTTG
TGAATTATTACTTCTTGTTCCAAAT