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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0353600-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:14171226:14175788:1 gene:Os01g0353600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to AP-3 complex subunit sigma-2. (Os01t0353600-00)
Sequence

ATGATCCAGGCCGTGATGGTCATGAGCACGCAGGGCAAGCCGCGCCTCCTCAAGTTCTAC
AGCTACCATGCCCCCGAGAAGCATCAGGAACTCGTCCGCGCCGTCTTCCAGTTGTTGTCT
GCAAGGCCGGACAGTGTAAGCAATTTCGTCAAGGTTGATGCAATCTTTGGACCGGGAGCG
AAATTGATCTACAAACATTTGGCCACATTGTACTTAGGTTTTGTCTTTGATGGCTCTGAA
AATGAACTTGCGGTGCTTGATCTTGTGCAAGTTTTTGTTGAAACATTGGACAGATGCTTC
AAGAATGTGTGTGAGCTTCACATTGTATTTAACTTCAACAAGCTGCATACAATTTTGGAT
GAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATAATGAGATCTGTA
GAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATT
TCAGAGCGTTTCAGCCGATGA

Peptide Sequence

PEP ID

Os01t0353600-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:14171226:14175788:1 gene:Os01g0353600 transcript:Os01t0353600-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to AP-3 complex subunit sigma-2. (Os01t0353600-00)
Sequence

MIQAVMVMSTQGKPRLLKFYSYHAPEKHQELVRAVFQLLSARPDSVSNFVKVDAIFGPGA
KLIYKHLATLYLGFVFDGSENELAVLDLVQVFVETLDRCFKNVCELHIVFNFNKLHTILD
EMILGGQVIETSSEQIMRSVEEIARLEKQSNTTSLIPKSISERFSR

Transcript Sequence

Transcript ID

Os01t0353600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:14171226:14175788:1 gene:Os01g0353600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to AP-3 complex subunit sigma-2. (Os01t0353600-00)
Sequence

CCCCATCACCATCAGCCATGATCCAGGCCGTGATGGTCATGAGCACGCAGGGCAAGCCGC
GCCTCCTCAAGTTCTACAGCTACCATGCCCCCGAGAAGCATCAGGAACTCGTCCGCGCCG
TCTTCCAGTTGTTGTCTGCAAGGCCGGACAGTGTAAGCAATTTCGTCAAGGTTGATGCAA
TCTTTGGACCGGGAGCGAAATTGATCTACAAACATTTGGCCACATTGTACTTAGGTTTTG
TCTTTGATGGCTCTGAAAATGAACTTGCGGTGCTTGATCTTGTGCAAGTTTTTGTTGAAA
CATTGGACAGATGCTTCAAGAATGTGTGTGAGCTTCACATTGTATTTAACTTCAACAAGC
TGCATACAATTTTGGATGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGC
AAATAATGAGATCTGTAGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCC
TCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGATGAGCCGTGTCATGGACAGAAACTT
TGAAGGCTTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTGCAATTCTCTC
AAGTCTCGAGCATCTACCATTTGACATGGACATGAGAGCTTGTAGCCATTGTGAATGTCT
CTTGTGTATCACGCATGAAATTGTAAGATGTGACCTGAAACGTGAATTCTTCTGTACTAT
CTGGCTTGCTTACCGATTGCAAGATGAGGCATCGTGTCTCCAAGACAAGAAAAGCTTGTT
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