Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0352100-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:14101994:14108083:1 gene:Os01g0352100 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os01t0352100-01)
Sequence

ATGGCGTCTCTCCCGGTGCCAAGCGTGCAGGCCATGGTGGCGGCCATCGGCATCGACCAT
GTTCCACCCAGATACCTCCGCCCCACGGACGCCGACGAGCCGGTCGCTTCTGACGGCGGC
GAGGCGGAGATCCCCGTCGTCGACTTCTGGAGGCTGCAGCTCGGCGACGGCGACGAGCTG
GCTCGCCTCCACATTGCCTGCCAGGACTGGGGCTTCTTCCAGCTGGTAAACCACAATGTT
CCAGAGGATGTGGTGGAGGGGATGAAGGCCAGCATCAAGGGATTCTTCGAGCTGCCTGCG
GAGACCAAGAAGCAGGTCGTTCAGGAGCCAGGGCAGCTGGAAGGCTACGGTCAGCTGTTC
GTTGTGTCTGAAGATCAGAAGCTCGACTGGGCTGACATCCTCTACGTGAAAACGCAGCCG
TTGCAGGACAGGAACCTCAGATTCTGGCCTGACCAACCTGCCGGCTTCAGAATGGCACTG
GACAGATACTGCGCGGCTGTGAAGATCACAGCGGATGGCCTTCTGGCTGCCATGGCGACC
AACCTGGGAGTGGAGTCGGAGGTGATCGCAGAGAGATGGGTGGGTGGAGTCCAGTCGGTG
AGGGTGCAGTACTACCCTCCGTGCGGTCAGGCGGACAAAGTAGTCGGCATCTCTCCTCAC
TCTGATGCTGATCTGGTGACCATTCTCCTCCAAGCGAACGAGGTGGATGGCCTGCAGATC
AGGAGAGGCGGGGCTTGGCTTCCCGTCAGGCCTCTGGAGGGCGCTCTCATCGTCAACGTG
GGAGACATTCGTCAGGTCTTCACTAATGGGAGGTACAAGAGCGTCGAGCACCGGGTTGTT
GTGGATGGGAAGAAAGAGCGGCTGTCGATGGCGACCTTCCATTCTCCAAGCAAAAACGCC
ATTGTAGGTCCTCTGAGCGAGATGGTGGAGCATGAAGACGATGCTGCTTATACAAGCATG
GACCATGACGAACTTCTGAAGCTCTTCTTCGCCAAGAAGCTGGAGGGGAAGAACTTCTTG
AACCCGATAAAGAAGCTGAAGAACAGCGGCTGA

Peptide Sequence

PEP ID

Os01t0352100-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:14101994:14108083:1 gene:Os01g0352100 transcript:Os01t0352100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os01t0352100-01)
Sequence

MASLPVPSVQAMVAAIGIDHVPPRYLRPTDADEPVASDGGEAEIPVVDFWRLQLGDGDEL
ARLHIACQDWGFFQLVNHNVPEDVVEGMKASIKGFFELPAETKKQVVQEPGQLEGYGQLF
VVSEDQKLDWADILYVKTQPLQDRNLRFWPDQPAGFRMALDRYCAAVKITADGLLAAMAT
NLGVESEVIAERWVGGVQSVRVQYYPPCGQADKVVGISPHSDADLVTILLQANEVDGLQI
RRGGAWLPVRPLEGALIVNVGDIRQVFTNGRYKSVEHRVVVDGKKERLSMATFHSPSKNA
IVGPLSEMVEHEDDAAYTSMDHDELLKLFFAKKLEGKNFLNPIKKLKNSG

Transcript Sequence

Transcript ID

Os01t0352100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:14101994:14108083:1 gene:Os01g0352100 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os01t0352100-01)
Sequence

AATCGAAACCGTCCGCATCTGACAGTGAAGGAAAGAGAACAGAGGCCATGGCGTCTCTCC
CGGTGCCAAGCGTGCAGGCCATGGTGGCGGCCATCGGCATCGACCATGTTCCACCCAGAT
ACCTCCGCCCCACGGACGCCGACGAGCCGGTCGCTTCTGACGGCGGCGAGGCGGAGATCC
CCGTCGTCGACTTCTGGAGGCTGCAGCTCGGCGACGGCGACGAGCTGGCTCGCCTCCACA
TTGCCTGCCAGGACTGGGGCTTCTTCCAGCTGGTAAACCACAATGTTCCAGAGGATGTGG
TGGAGGGGATGAAGGCCAGCATCAAGGGATTCTTCGAGCTGCCTGCGGAGACCAAGAAGC
AGGTCGTTCAGGAGCCAGGGCAGCTGGAAGGCTACGGTCAGCTGTTCGTTGTGTCTGAAG
ATCAGAAGCTCGACTGGGCTGACATCCTCTACGTGAAAACGCAGCCGTTGCAGGACAGGA
ACCTCAGATTCTGGCCTGACCAACCTGCCGGCTTCAGAATGGCACTGGACAGATACTGCG
CGGCTGTGAAGATCACAGCGGATGGCCTTCTGGCTGCCATGGCGACCAACCTGGGAGTGG
AGTCGGAGGTGATCGCAGAGAGATGGGTGGGTGGAGTCCAGTCGGTGAGGGTGCAGTACT
ACCCTCCGTGCGGTCAGGCGGACAAAGTAGTCGGCATCTCTCCTCACTCTGATGCTGATC
TGGTGACCATTCTCCTCCAAGCGAACGAGGTGGATGGCCTGCAGATCAGGAGAGGCGGGG
CTTGGCTTCCCGTCAGGCCTCTGGAGGGCGCTCTCATCGTCAACGTGGGAGACATTCGTC
AGGTCTTCACTAATGGGAGGTACAAGAGCGTCGAGCACCGGGTTGTTGTGGATGGGAAGA
AAGAGCGGCTGTCGATGGCGACCTTCCATTCTCCAAGCAAAAACGCCATTGTAGGTCCTC
TGAGCGAGATGGTGGAGCATGAAGACGATGCTGCTTATACAAGCATGGACCATGACGAAC
TTCTGAAGCTCTTCTTCGCCAAGAAGCTGGAGGGGAAGAACTTCTTGAACCCGATAAAGA
AGCTGAAGAACAGCGGCTGACCAAAGGAGTGGAAAGGAGACTTGCTCTGCTTGCAACATG
TGTCTGTCCAAAACAGGACATGTCCTTCACTTTTTTAAACACGTAGTTATCAAATTGTTT
GAAAAATTAAATAAGATTTGTACAGTATATATCTATTGTCCGAGTTGTTTTAGTAGACAG
TCAAATGATTCTTTAAATACTCAATGTAATATTTGTGGTAGAGGTTGAGACTTTACTAAA
ATCAGTAGGATGTTGATATGTAACATGTGTTTCACTTATTGTTCGATGCAACATCTTCAA
ATAAGGAGTAAAATATAATTGTCT